Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004013A_C01 KMC004013A_c01
(558 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65852.1| putative UDP-N-acetylglucosamine pyrophosphorylas... 187 6e-47
ref|NP_181047.1| putative UDP-N-acetylglucosamine pyrophosphoryl... 187 6e-47
ref|NP_683337.1| UDP-N-acetylglucosamine pyrophosphorylase-like ... 184 5e-46
gb|AAK83626.1| At1g31070/F17F8_1 [Arabidopsis thaliana] gi|19699... 184 5e-46
pir||B86436 protein F17F8.1 [imported] - Arabidopsis thaliana gi... 176 2e-43
>gb|AAM65852.1| putative UDP-N-acetylglucosamine pyrophosphorylase [Arabidopsis
thaliana]
Length = 502
Score = 187 bits (476), Expect = 6e-47
Identities = 87/94 (92%), Positives = 93/94 (98%)
Frame = -2
Query: 554 FPYSPTTALFEILREEEFAPVKNANGSNYDTPDSAKLLVLRLHTRWVIAAGGFLTHSVPL 375
FPY+P+TALFE+LREEEFAPVKNANGSNYDTP+SA+LLVLRLHTRWVIAAGGFLTHSVPL
Sbjct: 408 FPYAPSTALFEVLREEEFAPVKNANGSNYDTPESARLLVLRLHTRWVIAAGGFLTHSVPL 467
Query: 374 YATGVEVSPLCSYAGENLEPICRGRTFHAPCEIT 273
YATGVEVSPLCSYAGENLE ICRGRTFHAPCEI+
Sbjct: 468 YATGVEVSPLCSYAGENLEAICRGRTFHAPCEIS 501
>ref|NP_181047.1| putative UDP-N-acetylglucosamine pyrophosphorylase; protein id:
At2g35020.1, supported by cDNA: 5509., supported by
cDNA: gi_18087510 [Arabidopsis thaliana]
gi|6136087|sp|O64765|UAP1_ARATH Probable
UDP-N-acetylglucosamine pyrophosphorylase
gi|7485809|pir||T00483 hypothetical protein At2g35020
[imported] - Arabidopsis thaliana
gi|3033397|gb|AAC12841.1| putative
UDP-N-acetylglucosamine pyrophosphorylase [Arabidopsis
thaliana] gi|18087511|gb|AAL58890.1|AF462794_1
At2g35020/F19I3.25 [Arabidopsis thaliana]
Length = 502
Score = 187 bits (476), Expect = 6e-47
Identities = 87/94 (92%), Positives = 93/94 (98%)
Frame = -2
Query: 554 FPYSPTTALFEILREEEFAPVKNANGSNYDTPDSAKLLVLRLHTRWVIAAGGFLTHSVPL 375
FPY+P+TALFE+LREEEFAPVKNANGSNYDTP+SA+LLVLRLHTRWVIAAGGFLTHSVPL
Sbjct: 408 FPYAPSTALFEVLREEEFAPVKNANGSNYDTPESARLLVLRLHTRWVIAAGGFLTHSVPL 467
Query: 374 YATGVEVSPLCSYAGENLEPICRGRTFHAPCEIT 273
YATGVEVSPLCSYAGENLE ICRGRTFHAPCEI+
Sbjct: 468 YATGVEVSPLCSYAGENLEAICRGRTFHAPCEIS 501
>ref|NP_683337.1| UDP-N-acetylglucosamine pyrophosphorylase-like protein; protein id:
At1g31070.2, supported by cDNA: gi_15450738 [Arabidopsis
thaliana] gi|15450739|gb|AAK96641.1| At1g31070/F17F8_1
[Arabidopsis thaliana]
Length = 505
Score = 184 bits (468), Expect = 5e-46
Identities = 85/94 (90%), Positives = 92/94 (97%)
Frame = -2
Query: 554 FPYSPTTALFEILREEEFAPVKNANGSNYDTPDSAKLLVLRLHTRWVIAAGGFLTHSVPL 375
FPY+P+TALFE+LREEEFAPVKN NGSN+DTP+SA+LLVLRLHTRWVIAAGGFLTHSVPL
Sbjct: 411 FPYAPSTALFEVLREEEFAPVKNVNGSNFDTPESARLLVLRLHTRWVIAAGGFLTHSVPL 470
Query: 374 YATGVEVSPLCSYAGENLEPICRGRTFHAPCEIT 273
YATGVEVSPLCSYAGENLE ICRGRTFHAPCEI+
Sbjct: 471 YATGVEVSPLCSYAGENLEAICRGRTFHAPCEIS 504
>gb|AAK83626.1| At1g31070/F17F8_1 [Arabidopsis thaliana] gi|19699170|gb|AAL90951.1|
At1g31070/F17F8_1 [Arabidopsis thaliana]
Length = 266
Score = 184 bits (468), Expect = 5e-46
Identities = 85/94 (90%), Positives = 92/94 (97%)
Frame = -2
Query: 554 FPYSPTTALFEILREEEFAPVKNANGSNYDTPDSAKLLVLRLHTRWVIAAGGFLTHSVPL 375
FPY+P+TALFE+LREEEFAPVKN NGSN+DTP+SA+LLVLRLHTRWVIAAGGFLTHSVPL
Sbjct: 172 FPYAPSTALFEVLREEEFAPVKNVNGSNFDTPESARLLVLRLHTRWVIAAGGFLTHSVPL 231
Query: 374 YATGVEVSPLCSYAGENLEPICRGRTFHAPCEIT 273
YATGVEVSPLCSYAGENLE ICRGRTFHAPCEI+
Sbjct: 232 YATGVEVSPLCSYAGENLEAICRGRTFHAPCEIS 265
>pir||B86436 protein F17F8.1 [imported] - Arabidopsis thaliana
gi|9755397|gb|AAF98204.1|AC000107_27 F17F8.1
[Arabidopsis thaliana]
Length = 498
Score = 176 bits (445), Expect = 2e-43
Identities = 83/94 (88%), Positives = 90/94 (95%)
Frame = -2
Query: 554 FPYSPTTALFEILREEEFAPVKNANGSNYDTPDSAKLLVLRLHTRWVIAAGGFLTHSVPL 375
FPY+P+TALFE+LREEEFAPVKN NGSN+DTP+SA+LLVLRLHTRWVIAAGGFLTHSVPL
Sbjct: 406 FPYAPSTALFEVLREEEFAPVKNVNGSNFDTPESARLLVLRLHTRWVIAAGGFLTHSVPL 465
Query: 374 YATGVEVSPLCSYAGENLEPICRGRTFHAPCEIT 273
YAT EVSPLCSYAGENLE ICRGRTFHAPCEI+
Sbjct: 466 YAT--EVSPLCSYAGENLEAICRGRTFHAPCEIS 497
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 493,038,835
Number of Sequences: 1393205
Number of extensions: 10788881
Number of successful extensions: 33656
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 32473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33590
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
