Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004012A_C01 KMC004012A_c01
(675 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P26360|ATP3_IPOBA ATP synthase gamma chain, mitochondrial pre... 295 5e-79
pir||T01103 probable H+-transporting two-sector ATPase (EC 3.6.3... 279 2e-74
ref|NP_180863.1| mitochondrial F1-ATPase, gamma subunit (ATP3_AR... 279 2e-74
gb|AAM96955.1| mitochondrial F1-ATPase, gamma subunit (ATP3_ARAT... 278 5e-74
gb|AAM00946.1|AC021892_10 Putative ATP SYNTHASE GAMMA CHAIN, MIT... 222 3e-57
>sp|P26360|ATP3_IPOBA ATP synthase gamma chain, mitochondrial precursor
gi|1076684|pir||A47493 H+-transporting two-sector ATPase
(EC 3.6.3.14) gamma chain precursor, mitochondrial -
sweet potato gi|303626|dbj|BAA03526.1| F1-ATPase gammma
subunit [Ipomoea batatas]
Length = 326
Score = 295 bits (754), Expect = 5e-79
Identities = 157/195 (80%), Positives = 173/195 (88%), Gaps = 7/195 (3%)
Frame = +2
Query: 110 AALRREGKRLA--PLISPLPI---RSSPISPDQT--LNGFRSISTQIVRNRMKSVKNIQK 268
AALRREG+RLA P SP P+ RSS +SP + L+G RSISTQ+VRNRMKSVKNIQK
Sbjct: 4 AALRREGRRLAAAPFTSPTPLNALRSSLVSPSEEIGLSGVRSISTQVVRNRMKSVKNIQK 63
Query: 269 ITKAMKMVAASKLRAVQTRAENSRGLWQPFTALLGDATSVDVKKNVIVTVSSDKGLCGGI 448
ITKAMKMVAASKLRA+QTRAENSRGLWQPFTALLGD SVDVKKNVI+T+SSDKGLCGGI
Sbjct: 64 ITKAMKMVAASKLRAIQTRAENSRGLWQPFTALLGDTPSVDVKKNVIITISSDKGLCGGI 123
Query: 449 NSTSVKISRALSKLNAGPDKETKYVILGEKAKAQLIRDSKQDILLSLTELQKNPLNYTQV 628
NSTSVK SR + KLN+GP+KE KYVILGEKAKAQL+RDSK+DI L +TELQKNPLNYTQV
Sbjct: 124 NSTSVKTSRNIHKLNSGPEKENKYVILGEKAKAQLVRDSKKDIELIITELQKNPLNYTQV 183
Query: 629 SVLADDILKNVEFDA 673
SV+ADDILKNVEFDA
Sbjct: 184 SVVADDILKNVEFDA 198
>pir||T01103 probable H+-transporting two-sector ATPase (EC 3.6.3.14) gamma
chain, mitochondrial - Arabidopsis thaliana
Length = 323
Score = 279 bits (714), Expect = 2e-74
Identities = 149/192 (77%), Positives = 166/192 (85%), Gaps = 4/192 (2%)
Frame = +2
Query: 110 AALRREGKRLAPLISPLPIRS--SPISPDQT--LNGFRSISTQIVRNRMKSVKNIQKITK 277
A RREG+RL P I+ PI + SP+S DQ L G RSISTQ+VRNRMKSVKNIQKITK
Sbjct: 2 AVFRREGRRLLPSIAARPIAAIRSPLSSDQEEGLLGVRSISTQVVRNRMKSVKNIQKITK 61
Query: 278 AMKMVAASKLRAVQTRAENSRGLWQPFTALLGDATSVDVKKNVIVTVSSDKGLCGGINST 457
AMKMVAASKLRAVQ RAENSRGLWQPFTALLGD S+DVKK+V+VT+SSDKGLCGGINST
Sbjct: 62 AMKMVAASKLRAVQGRAENSRGLWQPFTALLGDNPSIDVKKSVVVTLSSDKGLCGGINST 121
Query: 458 SVKISRALSKLNAGPDKETKYVILGEKAKAQLIRDSKQDILLSLTELQKNPLNYTQVSVL 637
VK+SRAL KLNAGP+KE ++VI+GEKAKA + RDSK DI+LS+TEL KNPLNY QVSVL
Sbjct: 122 VVKVSRALYKLNAGPEKEVQFVIVGEKAKAIMFRDSKNDIVLSVTELNKNPLNYAQVSVL 181
Query: 638 ADDILKNVEFDA 673
ADDILKNVEFDA
Sbjct: 182 ADDILKNVEFDA 193
>ref|NP_180863.1| mitochondrial F1-ATPase, gamma subunit (ATP3_ARATH); protein id:
At2g33040.1, supported by cDNA: 26812., supported by
cDNA: gi_14517357, supported by cDNA: gi_1655479,
supported by cDNA: gi_17065101, supported by cDNA:
gi_20857421 [Arabidopsis thaliana]
gi|3334123|sp|Q96250|ATP3_ARATH ATP synthase gamma
chain, mitochondrial precursor gi|25290513|pir||F84740
hypothetical protein At2g33040 [imported] - Arabidopsis
thaliana gi|1655480|dbj|BAA13599.1| gamma subunit of
mitochondrial F1-ATPase [Arabidopsis thaliana]
gi|2924787|gb|AAC04916.1| mitochondrial F1-ATPase, gamma
subunit (ATP3_ARATH) [Arabidopsis thaliana]
gi|14517358|gb|AAK62570.1| At2g33040/F25I18.22
[Arabidopsis thaliana] gi|17065102|gb|AAL32705.1|
mitochondrial F1-ATPase, gamma subunit (ATP3_ARATH)
[Arabidopsis thaliana] gi|20196990|gb|AAM14859.1|
mitochondrial F1-ATPase, gamma subunit (ATP3_ARATH)
[Arabidopsis thaliana] gi|20857422|gb|AAM26719.1|
At2g33040/F25I18.22 [Arabidopsis thaliana]
gi|21554962|gb|AAM63740.1| mitochondrial F1-ATPase,
gamma subunit (ATP3_ARATH) [Arabidopsis thaliana]
Length = 325
Score = 279 bits (714), Expect = 2e-74
Identities = 149/192 (77%), Positives = 166/192 (85%), Gaps = 4/192 (2%)
Frame = +2
Query: 110 AALRREGKRLAPLISPLPIRS--SPISPDQT--LNGFRSISTQIVRNRMKSVKNIQKITK 277
A RREG+RL P I+ PI + SP+S DQ L G RSISTQ+VRNRMKSVKNIQKITK
Sbjct: 4 AVFRREGRRLLPSIAARPIAAIRSPLSSDQEEGLLGVRSISTQVVRNRMKSVKNIQKITK 63
Query: 278 AMKMVAASKLRAVQTRAENSRGLWQPFTALLGDATSVDVKKNVIVTVSSDKGLCGGINST 457
AMKMVAASKLRAVQ RAENSRGLWQPFTALLGD S+DVKK+V+VT+SSDKGLCGGINST
Sbjct: 64 AMKMVAASKLRAVQGRAENSRGLWQPFTALLGDNPSIDVKKSVVVTLSSDKGLCGGINST 123
Query: 458 SVKISRALSKLNAGPDKETKYVILGEKAKAQLIRDSKQDILLSLTELQKNPLNYTQVSVL 637
VK+SRAL KLNAGP+KE ++VI+GEKAKA + RDSK DI+LS+TEL KNPLNY QVSVL
Sbjct: 124 VVKVSRALYKLNAGPEKEVQFVIVGEKAKAIMFRDSKNDIVLSVTELNKNPLNYAQVSVL 183
Query: 638 ADDILKNVEFDA 673
ADDILKNVEFDA
Sbjct: 184 ADDILKNVEFDA 195
>gb|AAM96955.1| mitochondrial F1-ATPase, gamma subunit (ATP3_ARATH) [Arabidopsis
thaliana] gi|23198402|gb|AAN15728.1| mitochondrial
F1-ATPase, gamma subunit (ATP3_ARATH) [Arabidopsis
thaliana]
Length = 325
Score = 278 bits (711), Expect = 5e-74
Identities = 148/192 (77%), Positives = 166/192 (86%), Gaps = 4/192 (2%)
Frame = +2
Query: 110 AALRREGKRLAPLISPLPIRS--SPISPDQT--LNGFRSISTQIVRNRMKSVKNIQKITK 277
A RREG+RL P I+ PI + SP+S DQ L G RSISTQ+VRNRMKSVKNIQKITK
Sbjct: 4 AVFRREGRRLLPSIAARPIAAIRSPLSSDQEEGLLGVRSISTQVVRNRMKSVKNIQKITK 63
Query: 278 AMKMVAASKLRAVQTRAENSRGLWQPFTALLGDATSVDVKKNVIVTVSSDKGLCGGINST 457
AMKMVAASKLRAVQ RAENSRGLWQPFTALLGD S+DVK++V+VT+SSDKGLCGGINST
Sbjct: 64 AMKMVAASKLRAVQGRAENSRGLWQPFTALLGDNPSIDVKRSVVVTLSSDKGLCGGINST 123
Query: 458 SVKISRALSKLNAGPDKETKYVILGEKAKAQLIRDSKQDILLSLTELQKNPLNYTQVSVL 637
VK+SRAL KLNAGP+KE ++VI+GEKAKA + RDSK DI+LS+TEL KNPLNY QVSVL
Sbjct: 124 VVKVSRALYKLNAGPEKEVQFVIVGEKAKAIMFRDSKNDIVLSVTELNKNPLNYAQVSVL 183
Query: 638 ADDILKNVEFDA 673
ADDILKNVEFDA
Sbjct: 184 ADDILKNVEFDA 195
>gb|AAM00946.1|AC021892_10 Putative ATP SYNTHASE GAMMA CHAIN, MITOCHONDRIAL PRECURSOR [Oryza
sativa] gi|22725928|gb|AAN04938.1| Putative ATP SYNTHASE
GAMMA CHAIN, MITOCHONDRIAL PRECURSOR [Oryza sativa
(japonica cultivar-group)]
Length = 368
Score = 222 bits (566), Expect = 3e-57
Identities = 118/180 (65%), Positives = 136/180 (75%), Gaps = 32/180 (17%)
Frame = +2
Query: 230 VRNRMKSVKNIQKITKAMKMVAASKLRAVQTRAENSRGLWQPFTALLGDATSVDVKKNVI 409
+R RMKSV+NIQKITKAMKMVAASKLRAVQ R ENSRGLWQPFTALLGD SVDVKKNVI
Sbjct: 62 LRTRMKSVRNIQKITKAMKMVAASKLRAVQIRTENSRGLWQPFTALLGDVPSVDVKKNVI 121
Query: 410 VTVSSDKGLCGGINSTSVKISRALSKLNAGPDKETKYVILGEKAKAQLIRDSKQDILLSL 589
V ++SDKGLCGGINSTSVK+S+AL KL +GP+KE+KYVILGEK K QLIRDSK +I +++
Sbjct: 122 VAITSDKGLCGGINSTSVKVSKALHKLTSGPEKESKYVILGEKGKVQLIRDSKDNIEMTV 181
Query: 590 TELQKNPLNYTQ--------------------------------VSVLADDILKNVEFDA 673
+ELQKNP+NYTQ ++VLADDILKNVE+DA
Sbjct: 182 SELQKNPINYTQDKEWHWWWRKVVQLAELVSAVLITLQQKFTDVIAVLADDILKNVEYDA 241
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 584,489,005
Number of Sequences: 1393205
Number of extensions: 12990491
Number of successful extensions: 37399
Number of sequences better than 10.0: 254
Number of HSP's better than 10.0 without gapping: 36031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37225
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29704274460
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
