Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004009A_C01 KMC004009A_c01
(599 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194194.1| putative protein; protein id: At4g24630.1 [Arab... 53 3e-06
dbj|BAB10288.1| contains similarity to unknown protein~gene_id:M... 50 2e-05
ref|NP_199813.2| putative protein; protein id: At5g50020.1, supp... 50 2e-05
gb|EAA39344.1| GLP_177_26570_34507 [Giardia lamblia ATCC 50803] 33 2.8
>ref|NP_194194.1| putative protein; protein id: At4g24630.1 [Arabidopsis thaliana]
gi|7485967|pir||T05571 hypothetical protein F22K18.170 -
Arabidopsis thaliana gi|4220527|emb|CAA23000.1| putative
protein [Arabidopsis thaliana]
gi|7269313|emb|CAB79373.1| putative protein [Arabidopsis
thaliana]
Length = 374
Score = 53.1 bits (126), Expect = 3e-06
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = -3
Query: 573 SRGSNGQPHNTSEPDSILSSDR-RAQTIRSDNRHSSWERRSASWEIDQDVLANSNVTESR 397
SR N + N ++P L D RA +IR++ RH SW RRS SW++ A ++V ESR
Sbjct: 310 SRRCNAEDANNNQPHHTLDIDHERAGSIRTEARHESWGRRSGSWDV-----AATDVRESR 364
Query: 396 NYVTSKEMR 370
+Y T+K+ R
Sbjct: 365 SYATAKDGR 373
>dbj|BAB10288.1| contains similarity to unknown protein~gene_id:MPF21.3~pir||T05571
[Arabidopsis thaliana]
Length = 382
Score = 50.4 bits (119), Expect = 2e-05
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Frame = -3
Query: 594 ELDEDIRS--------RGSNGQPHNTSEPDSILSSDRRAQTIRSDNRHSSWERRSASWEI 439
++DED+ GS+ H + S+ RA TIRS+ RH +W RS + E
Sbjct: 302 DIDEDVMKLQQRLNDEEGSDTAHHKIDIDQMRIGSNERAPTIRSEARHGNWGARSNAQE- 360
Query: 438 DQDVLANSNVTESRNYVTSKEMR 370
+DV+A S+V ESR+Y ++E R
Sbjct: 361 -EDVIAGSSVRESRSYAAAEEGR 382
>ref|NP_199813.2| putative protein; protein id: At5g50020.1, supported by cDNA:
gi_17979078, supported by cDNA: gi_20465696 [Arabidopsis
thaliana] gi|17979079|gb|AAL49807.1| unknown protein
[Arabidopsis thaliana] gi|20465697|gb|AAM20317.1|
unknown protein [Arabidopsis thaliana]
Length = 407
Score = 50.4 bits (119), Expect = 2e-05
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Frame = -3
Query: 594 ELDEDIRS--------RGSNGQPHNTSEPDSILSSDRRAQTIRSDNRHSSWERRSASWEI 439
++DED+ GS+ H + S+ RA TIRS+ RH +W RS + E
Sbjct: 327 DIDEDVMKLQQRLNDEEGSDTAHHKIDIDQMRIGSNERAPTIRSEARHGNWGARSNAQE- 385
Query: 438 DQDVLANSNVTESRNYVTSKEMR 370
+DV+A S+V ESR+Y ++E R
Sbjct: 386 -EDVIAGSSVRESRSYAAAEEGR 407
>gb|EAA39344.1| GLP_177_26570_34507 [Giardia lamblia ATCC 50803]
Length = 2645
Score = 33.1 bits (74), Expect = 2.8
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Frame = -3
Query: 597 EELDEDIRSRGSNGQPHNTSEPDSILSSDRRAQTIRSDNRH-----SSWERRS---ASWE 442
E+LDE G G T D++++ + ++N H W+R++ A+WE
Sbjct: 907 EKLDEANEPDGQEGHEDLTESSDTVVTPRTEERRAAAENEHVYIFLIKWQRKAHCHATWE 966
Query: 441 IDQDVLANSNVTESRNYVTSKEMRQ 367
++ ++ S+ + +NY E Q
Sbjct: 967 LEDYLMHLSSYVKVKNYKKKYEKIQ 991
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 498,154,472
Number of Sequences: 1393205
Number of extensions: 10281936
Number of successful extensions: 24286
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 23535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24277
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
