Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004006A_C01 KMC004006A_c01
(569 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB41326.1| membrane associated protein [Arabidopsis thaliana] 137 7e-32
ref|NP_568804.1| membrane associated protein; protein id: At5g54... 137 7e-32
pir||T05153 hypothetical protein F18E5.70 - Arabidopsis thaliana... 135 4e-31
ref|NP_567627.1| putative membrane associated protein; protein i... 135 4e-31
dbj|BAA97133.1| membrane associated protein [Arabidopsis thaliana] 122 3e-27
>gb|AAB41326.1| membrane associated protein [Arabidopsis thaliana]
Length = 265
Score = 137 bits (346), Expect = 7e-32
Identities = 67/82 (81%), Positives = 76/82 (91%)
Frame = -3
Query: 567 QRDQVAVEQVLRVIFLDPERPSPAMDKLKRQLAEAEAALESRKKPPEETGPRVAGEGLVI 388
Q+DQVAVEQVLRVIF+D +RPS A++KLKRQL EAEAA+E+RKKPP ETGPRV GEGLVI
Sbjct: 183 QKDQVAVEQVLRVIFIDADRPSAALEKLKRQLDEAEAAVEARKKPPPETGPRVVGEGLVI 242
Query: 387 DEWKERRERYLARQQVEGVDSV 322
DEWKERRE+YLARQQVE VDS+
Sbjct: 243 DEWKERREKYLARQQVESVDSL 264
>ref|NP_568804.1| membrane associated protein; protein id: At5g54110.1, supported by
cDNA: gi_1800146 [Arabidopsis thaliana]
Length = 266
Score = 137 bits (346), Expect = 7e-32
Identities = 67/82 (81%), Positives = 76/82 (91%)
Frame = -3
Query: 567 QRDQVAVEQVLRVIFLDPERPSPAMDKLKRQLAEAEAALESRKKPPEETGPRVAGEGLVI 388
Q+DQVAVEQVLRVIF+D +RPS A++KLKRQL EAEAA+E+RKKPP ETGPRV GEGLVI
Sbjct: 184 QKDQVAVEQVLRVIFIDADRPSAALEKLKRQLDEAEAAVEARKKPPPETGPRVVGEGLVI 243
Query: 387 DEWKERRERYLARQQVEGVDSV 322
DEWKERRE+YLARQQVE VDS+
Sbjct: 244 DEWKERREKYLARQQVESVDSL 265
>pir||T05153 hypothetical protein F18E5.70 - Arabidopsis thaliana
gi|3080389|emb|CAA18709.1| putative membrane associated
protein [Arabidopsis thaliana]
gi|7268942|emb|CAB81252.1| putative membrane associated
protein [Arabidopsis thaliana]
Length = 293
Score = 135 bits (340), Expect = 4e-31
Identities = 64/82 (78%), Positives = 76/82 (92%)
Frame = -3
Query: 567 QRDQVAVEQVLRVIFLDPERPSPAMDKLKRQLAEAEAALESRKKPPEETGPRVAGEGLVI 388
Q+D V+ EQ+LRVIFLDPER +PA++KLKRQLAEA+AA+E+RKKPPEETGP++ GEGLVI
Sbjct: 212 QKDDVSKEQILRVIFLDPERSNPALEKLKRQLAEADAAVEARKKPPEETGPKMIGEGLVI 271
Query: 387 DEWKERRERYLARQQVEGVDSV 322
DEWKERRERYLA+QQ EG DSV
Sbjct: 272 DEWKERRERYLAQQQGEGADSV 293
>ref|NP_567627.1| putative membrane associated protein; protein id: At4g21450.1,
supported by cDNA: 33975., supported by cDNA:
gi_17979372, supported by cDNA: gi_20465772 [Arabidopsis
thaliana] gi|17979373|gb|AAL49912.1| putative membrane
associated protein [Arabidopsis thaliana]
gi|20465773|gb|AAM20375.1| putative membrane associated
protein [Arabidopsis thaliana]
gi|21592907|gb|AAM64857.1| putative membrane associated
protein [Arabidopsis thaliana]
Length = 295
Score = 135 bits (340), Expect = 4e-31
Identities = 64/82 (78%), Positives = 76/82 (92%)
Frame = -3
Query: 567 QRDQVAVEQVLRVIFLDPERPSPAMDKLKRQLAEAEAALESRKKPPEETGPRVAGEGLVI 388
Q+D V+ EQ+LRVIFLDPER +PA++KLKRQLAEA+AA+E+RKKPPEETGP++ GEGLVI
Sbjct: 214 QKDDVSKEQILRVIFLDPERSNPALEKLKRQLAEADAAVEARKKPPEETGPKMIGEGLVI 273
Query: 387 DEWKERRERYLARQQVEGVDSV 322
DEWKERRERYLA+QQ EG DSV
Sbjct: 274 DEWKERRERYLAQQQGEGADSV 295
>dbj|BAA97133.1| membrane associated protein [Arabidopsis thaliana]
Length = 295
Score = 122 bits (306), Expect = 3e-27
Identities = 67/111 (60%), Positives = 76/111 (68%), Gaps = 29/111 (26%)
Frame = -3
Query: 567 QRDQVAVEQVLRVIFLDPERPSPAMDKLKRQLAEAEAALESRKKPPEETGPRVAGEGLVI 388
Q+DQVAVEQVLRVIF+D +RPS A++KLKRQL EAEAA+E+RKKPP ETGPRV GEGLVI
Sbjct: 184 QKDQVAVEQVLRVIFIDADRPSAALEKLKRQLDEAEAAVEARKKPPPETGPRVVGEGLVI 243
Query: 387 DEW-----------------------------KERRERYLARQQVEGVDSV 322
DEW KERRE+YLARQQVE VDS+
Sbjct: 244 DEWVTYNYKIFGPFIVVPSFSHIFTKVCVIYQKERREKYLARQQVESVDSL 294
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 496,249,633
Number of Sequences: 1393205
Number of extensions: 11084440
Number of successful extensions: 33860
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 32316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33832
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
