Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004004A_C01 KMC004004A_c01
(524 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC10555.1| ammonium transporter (AMT1.1) [Lotus japonicus] 224 5e-58
gb|AAG24944.1| putative ammonium transporter AMT1;1 [Lotus japon... 224 5e-58
sp|P58905|AT11_LYCES Ammonium transporter 1, member 1 (LeAMT1;1) 168 4e-41
ref|NP_193087.1| ammonium transport protein (AMT1); protein id: ... 163 1e-39
sp|O04161|AT12_LYCES Ammonium transporter 1, member 2 (LeAMT1;2)... 163 1e-39
>emb|CAC10555.1| ammonium transporter (AMT1.1) [Lotus japonicus]
Length = 502
Score = 224 bits (571), Expect = 5e-58
Identities = 109/109 (100%), Positives = 109/109 (100%)
Frame = -2
Query: 523 KEEYVNQVYPGKPGRPYGLFMGGGGKLLGAHVIQILVIIGWVSATMGPLFFILNKMKLLR 344
KEEYVNQVYPGKPGRPYGLFMGGGGKLLGAHVIQILVIIGWVSATMGPLFFILNKMKLLR
Sbjct: 394 KEEYVNQVYPGKPGRPYGLFMGGGGKLLGAHVIQILVIIGWVSATMGPLFFILNKMKLLR 453
Query: 343 ISTEDELAGMDLTRHGGFAYAYEDDESHKPGIQLRKIEPNSSSTPSAES 197
ISTEDELAGMDLTRHGGFAYAYEDDESHKPGIQLRKIEPNSSSTPSAES
Sbjct: 454 ISTEDELAGMDLTRHGGFAYAYEDDESHKPGIQLRKIEPNSSSTPSAES 502
>gb|AAG24944.1| putative ammonium transporter AMT1;1 [Lotus japonicus]
Length = 501
Score = 224 bits (571), Expect = 5e-58
Identities = 109/109 (100%), Positives = 109/109 (100%)
Frame = -2
Query: 523 KEEYVNQVYPGKPGRPYGLFMGGGGKLLGAHVIQILVIIGWVSATMGPLFFILNKMKLLR 344
KEEYVNQVYPGKPGRPYGLFMGGGGKLLGAHVIQILVIIGWVSATMGPLFFILNKMKLLR
Sbjct: 393 KEEYVNQVYPGKPGRPYGLFMGGGGKLLGAHVIQILVIIGWVSATMGPLFFILNKMKLLR 452
Query: 343 ISTEDELAGMDLTRHGGFAYAYEDDESHKPGIQLRKIEPNSSSTPSAES 197
ISTEDELAGMDLTRHGGFAYAYEDDESHKPGIQLRKIEPNSSSTPSAES
Sbjct: 453 ISTEDELAGMDLTRHGGFAYAYEDDESHKPGIQLRKIEPNSSSTPSAES 501
>sp|P58905|AT11_LYCES Ammonium transporter 1, member 1 (LeAMT1;1)
Length = 488
Score = 168 bits (425), Expect = 4e-41
Identities = 80/103 (77%), Positives = 95/103 (91%)
Frame = -2
Query: 523 KEEYVNQVYPGKPGRPYGLFMGGGGKLLGAHVIQILVIIGWVSATMGPLFFILNKMKLLR 344
K E+V+QVYPGKPGRP+GLFMGGGGKLLGAH+IQILVIIGWVSATMGPLF+IL+K KLLR
Sbjct: 388 KGEFVDQVYPGKPGRPHGLFMGGGGKLLGAHIIQILVIIGWVSATMGPLFYILHKFKLLR 447
Query: 343 ISTEDELAGMDLTRHGGFAYAYEDDESHKPGIQLRKIEPNSSS 215
IS+EDE+AGMDLTRHGGFAY +E+D K G+Q+R+IEP +S+
Sbjct: 448 ISSEDEMAGMDLTRHGGFAYYHEEDP--KLGMQMRRIEPTTST 488
>ref|NP_193087.1| ammonium transport protein (AMT1); protein id: At4g13510.1,
supported by cDNA: gi_14335079, supported by cDNA:
gi_551218 [Arabidopsis thaliana]
gi|1703292|sp|P54144|AT11_ARATH Ammonium transporter 1,
member 1 (AtAMT1;1) gi|7450346|pir||T06653 ammonium
transport protein amt1 - Arabidopsis thaliana
gi|551219|emb|CAA53473.1| amt1 [Arabidopsis thaliana]
gi|4678377|emb|CAB41109.1| ammonium transport protein
(AMT1) [Arabidopsis thaliana] gi|7268054|emb|CAB78393.1|
ammonium transport protein (AMT1) [Arabidopsis thaliana]
Length = 501
Score = 163 bits (413), Expect = 1e-39
Identities = 80/110 (72%), Positives = 94/110 (84%), Gaps = 1/110 (0%)
Frame = -2
Query: 523 KEEYVNQVYPGKPGRPYGLFMGGGGKLLGAHVIQILVIIGWVSATMGPLFFILNKMKLLR 344
+E+Y+NQ+Y KPGRP+GLFMGGGGKLLGA +IQI+VI GWVSATMG LFFIL KMKLLR
Sbjct: 388 QEKYLNQIYGNKPGRPHGLFMGGGGKLLGAQLIQIIVITGWVSATMGTLFFILKKMKLLR 447
Query: 343 ISTEDELAGMDLTRHGGFAYAY-EDDESHKPGIQLRKIEPNSSSTPSAES 197
IS+EDE+AGMD+TRHGGFAY Y +DDESHK IQLR++EP S S A +
Sbjct: 448 ISSEDEMAGMDMTRHGGFAYMYFDDDESHK-AIQLRRVEPRSPSPSGANT 496
>sp|O04161|AT12_LYCES Ammonium transporter 1, member 2 (LeAMT1;2) gi|7450343|pir||T06585
ammonium transporter 2 - tomato
gi|2065194|emb|CAA64475.1| ammonium transporter
[Lycopersicon esculentum]
Length = 514
Score = 163 bits (413), Expect = 1e-39
Identities = 76/111 (68%), Positives = 93/111 (83%), Gaps = 2/111 (1%)
Frame = -2
Query: 523 KEEYVNQVYPGKPGRPYGLFMGGGGKLLGAHVIQILVIIGWVSATMGPLFFILNKMKLLR 344
K+EYVN+VYPG P RPYGLFMGGGGKLLGA VIQ++VIIGWVS TMGPLF++L+K KLLR
Sbjct: 397 KKEYVNEVYPGFPNRPYGLFMGGGGKLLGAQVIQVVVIIGWVSVTMGPLFYLLHKFKLLR 456
Query: 343 ISTEDELAGMDLTRHGGFAYAY--EDDESHKPGIQLRKIEPNSSSTPSAES 197
IS +DE AGMDLTRHGGFAY Y ED+ S PG ++ ++EP ++STP ++
Sbjct: 457 ISRDDETAGMDLTRHGGFAYIYHDEDEGSSMPGFKMTRVEPTNTSTPDHQN 507
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 508,459,423
Number of Sequences: 1393205
Number of extensions: 11924657
Number of successful extensions: 44363
Number of sequences better than 10.0: 115
Number of HSP's better than 10.0 without gapping: 38952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44098
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
