Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004003A_C01 KMC004003A_c01
(527 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190176.1| putative protein; protein id: At3g45900.1 [Arab... 161 5e-39
gb|AAO66551.1| hypothetical protein [Oryza sativa (japonica cult... 152 2e-36
ref|NP_200114.1| putative protein; protein id: At5g53020.1 [Arab... 60 2e-08
dbj|BAB90693.1| B1156H12.28 [Oryza sativa (japonica cultivar-gro... 53 3e-06
emb|CAA67466.1| ORF D1067 [Saccharomyces cerevisiae] 34 0.93
>ref|NP_190176.1| putative protein; protein id: At3g45900.1 [Arabidopsis thaliana]
gi|11357476|pir||T47530 hypothetical protein F16L2.110 -
Arabidopsis thaliana gi|7339491|emb|CAB82814.1| putative
protein [Arabidopsis thaliana]
Length = 388
Score = 161 bits (407), Expect = 5e-39
Identities = 85/121 (70%), Positives = 100/121 (82%), Gaps = 1/121 (0%)
Frame = -3
Query: 525 CRRI-ASDPSEPSLSSEFRTQTQTEFLLEAFRLQQGASETGQKLMALPTEIGKSLYRDEL 349
CRR+ +SDP + +L EFRTQ Q EFLLE FRLQQ ASETGQKL++L TEI +S D+L
Sbjct: 269 CRRMQSSDPCDATLGPEFRTQRQNEFLLECFRLQQRASETGQKLVSLQTEITRSNQGDQL 328
Query: 348 KSEATPTTRRSLDSIRNNFKDLQRNLEIWLARIIGDLEGILARDGASRVREYYISRYPFV 169
S+A T RSLD I+NN K++QRNLEIWLARIIGDLEGILARDGASRVRE+Y++RYPFV
Sbjct: 329 -SQAKMNTGRSLDLIKNNLKEVQRNLEIWLARIIGDLEGILARDGASRVREFYVARYPFV 387
Query: 168 Q 166
Q
Sbjct: 388 Q 388
>gb|AAO66551.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 460
Score = 152 bits (385), Expect = 2e-36
Identities = 77/117 (65%), Positives = 95/117 (80%), Gaps = 1/117 (0%)
Frame = -3
Query: 525 CRRI-ASDPSEPSLSSEFRTQTQTEFLLEAFRLQQGASETGQKLMALPTEIGKSLYRDEL 349
C+R+ SDP + +LSSEFRTQ QTE+LLEAF LQ A+ET QKL AL E K + DEL
Sbjct: 339 CKRMQTSDPCDSTLSSEFRTQRQTEYLLEAFHLQHRATETRQKLSALQAETAKGSFGDEL 398
Query: 348 KSEATPTTRRSLDSIRNNFKDLQRNLEIWLARIIGDLEGILARDGASRVREYYISRY 178
+EA +TRR+L SIRNNFK++QR+LEIWLARI+GDLEG+LARDGASR+REY++S Y
Sbjct: 399 TAEAKMSTRRALSSIRNNFKEIQRSLEIWLARILGDLEGMLARDGASRIREYFLSPY 455
>ref|NP_200114.1| putative protein; protein id: At5g53020.1 [Arabidopsis thaliana]
gi|8809591|dbj|BAA97142.1|
emb|CAB82814.1~gene_id:MNB8.8~similar to unknown protein
[Arabidopsis thaliana]
Length = 720
Score = 59.7 bits (143), Expect = 2e-08
Identities = 39/116 (33%), Positives = 68/116 (58%), Gaps = 12/116 (10%)
Frame = -3
Query: 525 CRRI-ASDPSEPSLSSEFRTQTQTE---FLLEAFRLQQGASETGQKLMALPTEIGKSLYR 358
C+R+ +DP + S + + +T FL E F+LQ+ TGQKLM + ++I
Sbjct: 591 CKRMHVNDPQKISGKNRANGEAKTSLEHFLDETFQLQRYIVATGQKLMEIQSKIASGFVE 650
Query: 357 ---DELKSEATPTT-----RRSLDSIRNNFKDLQRNLEIWLARIIGDLEGILARDG 214
D + +E++ ++ R ++I++ F+++QR LE+ ++R IGDLEG LAR+G
Sbjct: 651 FLVDLITTESSSSSSSFDPERFAENIKSLFQEVQRGLEVRISRCIGDLEGTLAREG 706
>dbj|BAB90693.1| B1156H12.28 [Oryza sativa (japonica cultivar-group)]
gi|20521472|dbj|BAB91980.1| OSJNBa0024F24.16 [Oryza
sativa (japonica cultivar-group)]
Length = 961
Score = 52.8 bits (125), Expect = 3e-06
Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Frame = -3
Query: 522 RRIASDPSEPSLSSEFRTQTQTEFLLEAFRLQQGASETGQKLMALPTEIGKSLYRDELKS 343
RR + E ++ FL E F+LQ+ TGQKL+ + + I SL R
Sbjct: 851 RRQRRESEEDGSGDREQSAALARFLEETFQLQRYMVATGQKLLEMQSRIAPSLERAAGNG 910
Query: 342 EATPTTR--RSLDSIRNNFKDLQRNLEIWLARIIGDLEGILARDG 214
R +D + +D+QR LE+ +ARIIGDLEG L G
Sbjct: 911 GGNDGVDMGRFMDVVGALLRDVQRGLEVRIARIIGDLEGTLTFHG 955
>emb|CAA67466.1| ORF D1067 [Saccharomyces cerevisiae]
Length = 102
Score = 34.3 bits (77), Expect = 0.93
Identities = 18/53 (33%), Positives = 30/53 (55%)
Frame = +3
Query: 303 LWSPETVLW*AWPHFLTHPYKGSSQFLLAVPLVSGQSQMHPVEAEMLPVKTLF 461
LW+ T +W WP T + + FL+++ L Q+ H V + +LPV++LF
Sbjct: 36 LWN--TNIWIFWPPLATLGLQTHNNFLISIALKGTQNLWHIVGSILLPVESLF 86
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 458,276,634
Number of Sequences: 1393205
Number of extensions: 9771264
Number of successful extensions: 24252
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 23625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24245
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
