Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004002A_C01 KMC004002A_c01
(584 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL49875.1| unknown protein [Arabidopsis thaliana] gi|2046598... 150 1e-35
pir||T50810 hypothetical protein T30N20_280 - Arabidopsis thalia... 150 1e-35
gb|AAH12439.1|AAH12439 Unknown (protein for IMAGE:3859950) [Homo... 75 6e-13
ref|NP_078930.1| hypothetical protein FLJ23323 [Homo sapiens] gi... 75 6e-13
ref|NP_083003.1| RIKEN cDNA 4632412I24 [Mus musculus] gi|1285250... 74 1e-12
>gb|AAL49875.1| unknown protein [Arabidopsis thaliana] gi|20465981|gb|AAM20212.1|
unknown protein [Arabidopsis thaliana]
Length = 368
Score = 150 bits (379), Expect = 1e-35
Identities = 71/110 (64%), Positives = 94/110 (84%)
Frame = -2
Query: 583 PYEVPIASIKIQHLHREVPSSEMFYSLNASIVGLAVDSEGPENLPWCLGLGIVRGIDTIK 404
PYEVPI+S+ I HLH ++PSSE++YSLNASIVGL + +E E+LP C+GLGIVRGIDT +
Sbjct: 259 PYEVPISSLTINHLHCQIPSSEVYYSLNASIVGLGISTEVFEDLPSCVGLGIVRGIDTER 318
Query: 403 GVLYVITPVPHSSLDKVNLLLQGYIQIPICLLQVQGCISPYMSADVLTTS 254
G+LYVITPVP + ++KV+LLLQGYIQ+P CLL+V+ SPY+SA+VL ++
Sbjct: 319 GILYVITPVPENLVEKVDLLLQGYIQLPTCLLEVKDYRSPYLSANVLAST 368
>pir||T50810 hypothetical protein T30N20_280 - Arabidopsis thaliana
gi|8979735|emb|CAB96856.1| putative protein [Arabidopsis
thaliana]
Length = 380
Score = 150 bits (379), Expect = 1e-35
Identities = 71/110 (64%), Positives = 94/110 (84%)
Frame = -2
Query: 583 PYEVPIASIKIQHLHREVPSSEMFYSLNASIVGLAVDSEGPENLPWCLGLGIVRGIDTIK 404
PYEVPI+S+ I HLH ++PSSE++YSLNASIVGL + +E E+LP C+GLGIVRGIDT +
Sbjct: 271 PYEVPISSLTINHLHCQIPSSEVYYSLNASIVGLGISTEVFEDLPSCVGLGIVRGIDTER 330
Query: 403 GVLYVITPVPHSSLDKVNLLLQGYIQIPICLLQVQGCISPYMSADVLTTS 254
G+LYVITPVP + ++KV+LLLQGYIQ+P CLL+V+ SPY+SA+VL ++
Sbjct: 331 GILYVITPVPENLVEKVDLLLQGYIQLPTCLLEVKDYRSPYLSANVLAST 380
>gb|AAH12439.1|AAH12439 Unknown (protein for IMAGE:3859950) [Homo sapiens]
Length = 259
Score = 75.1 bits (183), Expect = 6e-13
Identities = 47/120 (39%), Positives = 65/120 (54%), Gaps = 15/120 (12%)
Frame = -2
Query: 583 PYEVPIASIKIQHLHREVPSSEMFYSLNASIVGLAV---DSEGPENLPW---------CL 440
PY+VP ++ ++ H +V + + Y++NAS VGL D G N P CL
Sbjct: 104 PYQVPFNAVALRITHSDVAPTHILYAVNASWVGLCKIQDDVRGYTNGPILLAQTPICDCL 163
Query: 439 GLGIVRGIDTIKGVLYVITPVPHSSLDKVNLLLQGYIQIPICLLQVQGCIS---PYMSAD 269
G GI RGID K + +++TPVP L VN LL G I IP C+L+ Q I PY++ D
Sbjct: 164 GFGICRGIDMEKRLYHILTPVPPEELRTVNCLLVGAIAIPHCVLKCQRGIEGTVPYVTTD 223
>ref|NP_078930.1| hypothetical protein FLJ23323 [Homo sapiens]
gi|10439969|dbj|BAB15611.1| unnamed protein product
[Homo sapiens] gi|14349355|gb|AAH09257.1|AAH09257
hypothetical protein FLJ23323 [Homo sapiens]
Length = 332
Score = 75.1 bits (183), Expect = 6e-13
Identities = 47/120 (39%), Positives = 65/120 (54%), Gaps = 15/120 (12%)
Frame = -2
Query: 583 PYEVPIASIKIQHLHREVPSSEMFYSLNASIVGLAV---DSEGPENLPW---------CL 440
PY+VP ++ ++ H +V + + Y++NAS VGL D G N P CL
Sbjct: 177 PYQVPFNAVALRITHSDVAPTHILYAVNASWVGLCKIQDDVRGYTNGPILLAQTPICDCL 236
Query: 439 GLGIVRGIDTIKGVLYVITPVPHSSLDKVNLLLQGYIQIPICLLQVQGCIS---PYMSAD 269
G GI RGID K + +++TPVP L VN LL G I IP C+L+ Q I PY++ D
Sbjct: 237 GFGICRGIDMEKRLYHILTPVPPEELRTVNCLLVGAIAIPHCVLKCQRGIEGTVPYVTTD 296
>ref|NP_083003.1| RIKEN cDNA 4632412I24 [Mus musculus] gi|12852502|dbj|BAB29433.1|
unnamed protein product [Mus musculus]
Length = 671
Score = 74.3 bits (181), Expect = 1e-12
Identities = 45/107 (42%), Positives = 61/107 (56%), Gaps = 12/107 (11%)
Frame = -2
Query: 583 PYEVPIASIKIQHLHREVPSSEMFYSLNASIVGLA--VD-----SEGPENLPW-----CL 440
PY+VP +++ I+ LH +V + + Y++NAS VGL VD + GP L CL
Sbjct: 564 PYQVPFSAVAIRVLHADVAPTHILYAVNASWVGLCRIVDDMKGYTRGPILLAQNPICDCL 623
Query: 439 GLGIVRGIDTIKGVLYVITPVPHSSLDKVNLLLQGYIQIPICLLQVQ 299
G GI RGID K +++TP+P L VN LL G I IP C+ Q Q
Sbjct: 624 GFGICRGIDMDKRTYHILTPLPPEELKTVNCLLVGSISIPHCIFQNQ 670
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 491,639,369
Number of Sequences: 1393205
Number of extensions: 10555064
Number of successful extensions: 22094
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 21580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22085
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
