Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004001A_C01 KMC004001A_c01
(698 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD56659.1| malate dehydrogenase [Glycine max] 347 7e-95
pir||T09286 malate dehydrogenase (EC 1.1.1.37) precursor - alfal... 336 2e-91
emb|CAD33241.1| putative mitochondrial NAD-dependent malate dehy... 329 2e-89
emb|CAD33240.1| putative mitochondrial NAD-dependent malate dehy... 328 3e-89
emb|CAD33244.1| putative mitochondrial NAD-dependent malate dehy... 327 1e-88
>gb|AAD56659.1| malate dehydrogenase [Glycine max]
Length = 345
Score = 347 bits (891), Expect = 7e-95
Identities = 178/198 (89%), Positives = 185/198 (92%), Gaps = 4/198 (2%)
Frame = +3
Query: 117 MMKPSMLRS----AVSRCSQLSRRGYATNPVPERKVAVLGAAGGIGQPLSLLMKLNPLVS 284
MMKPSMLRS A S L RRGYA+ PVPERKVAVLGAAGGIGQPLSLLMKLNPLVS
Sbjct: 1 MMKPSMLRSLHSAATRGASHLFRRGYASEPVPERKVAVLGAAGGIGQPLSLLMKLNPLVS 60
Query: 285 SLSLYDIAGTPGVAADVSHINTRSEVVGYQGEEQLGKALEGADIVIIPAGVPRKPGMTRD 464
SLSLYDIAGTPGVAAD+SHINTRSEVVGYQG+E+LGKALEGAD+VIIPAGVPRKPGMTRD
Sbjct: 61 SLSLYDIAGTPGVAADISHINTRSEVVGYQGDEELGKALEGADVVIIPAGVPRKPGMTRD 120
Query: 465 DLFNINAGIVKGLCSAIAKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDERRLFGVTT 644
DLFNINAGIVK LC+AIAKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE+RLFGVTT
Sbjct: 121 DLFNINAGIVKTLCTAIAKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKRLFGVTT 180
Query: 645 LDVVRAKTFYAGKAKVPV 698
LDVVRAKTFYAGKA VPV
Sbjct: 181 LDVVRAKTFYAGKANVPV 198
>pir||T09286 malate dehydrogenase (EC 1.1.1.37) precursor - alfalfa
gi|2827080|gb|AAB99755.1| malate dehydrogenase precursor
[Medicago sativa]
Length = 343
Score = 336 bits (862), Expect = 2e-91
Identities = 169/195 (86%), Positives = 184/195 (93%), Gaps = 1/195 (0%)
Frame = +3
Query: 117 MMKPSMLRSAVSRCSQ-LSRRGYATNPVPERKVAVLGAAGGIGQPLSLLMKLNPLVSSLS 293
MM+PS+LRS S S+ ++RRGYAT PVPERKVA+LGAAGGIGQPLSLLMKLNPLVS+LS
Sbjct: 1 MMRPSILRSVKSAVSRSITRRGYATEPVPERKVAILGAAGGIGQPLSLLMKLNPLVSTLS 60
Query: 294 LYDIAGTPGVAADVSHINTRSEVVGYQGEEQLGKALEGADIVIIPAGVPRKPGMTRDDLF 473
LYDIAGTPGVAADVSHIN+RS+V GY GE++LGKALEGAD+VIIPAGVPRKPGMTRDDLF
Sbjct: 61 LYDIAGTPGVAADVSHINSRSQVTGYAGEDELGKALEGADVVIIPAGVPRKPGMTRDDLF 120
Query: 474 NINAGIVKGLCSAIAKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDERRLFGVTTLDV 653
NINAGIVK L +AI+KYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE+RLFGVTTLDV
Sbjct: 121 NINAGIVKSLATAISKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKRLFGVTTLDV 180
Query: 654 VRAKTFYAGKAKVPV 698
VRAKTFYAGKA VPV
Sbjct: 181 VRAKTFYAGKANVPV 195
>emb|CAD33241.1| putative mitochondrial NAD-dependent malate dehydrogenase [Solanum
tuberosum] gi|21388548|emb|CAD33242.1| putative
mitochondrial NAD-dependent malate dehydrogenase
[Solanum tuberosum]
Length = 342
Score = 329 bits (844), Expect = 2e-89
Identities = 168/194 (86%), Positives = 180/194 (92%)
Frame = +3
Query: 117 MMKPSMLRSAVSRCSQLSRRGYATNPVPERKVAVLGAAGGIGQPLSLLMKLNPLVSSLSL 296
M+K + RS+ + S +SRRG+A+ PERKVAVLGAAGGIGQPLSLLMKLNPLVSSLSL
Sbjct: 1 MLKSIVRRSSTAGASYVSRRGFASGSAPERKVAVLGAAGGIGQPLSLLMKLNPLVSSLSL 60
Query: 297 YDIAGTPGVAADVSHINTRSEVVGYQGEEQLGKALEGADIVIIPAGVPRKPGMTRDDLFN 476
YDIAGTPGVAADVSHINTRSEVVG+ GEEQLGKALEGADIVIIPAGVPRKPGMTRDDLFN
Sbjct: 61 YDIAGTPGVAADVSHINTRSEVVGFAGEEQLGKALEGADIVIIPAGVPRKPGMTRDDLFN 120
Query: 477 INAGIVKGLCSAIAKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDERRLFGVTTLDVV 656
INAGIVK LC+AIAKYCP+ALVNMISNPVNSTVPIAAEVFKKAGTYDE++LFGVT LDVV
Sbjct: 121 INAGIVKSLCTAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTMLDVV 180
Query: 657 RAKTFYAGKAKVPV 698
RAKTFYAGKAKV V
Sbjct: 181 RAKTFYAGKAKVNV 194
>emb|CAD33240.1| putative mitochondrial NAD-dependent malate dehydrogenase [Solanum
tuberosum]
Length = 346
Score = 328 bits (842), Expect = 3e-89
Identities = 171/198 (86%), Positives = 181/198 (91%), Gaps = 5/198 (2%)
Frame = +3
Query: 120 MKPSMLRSAVSRCSQ-----LSRRGYATNPVPERKVAVLGAAGGIGQPLSLLMKLNPLVS 284
M+ SML+S V R S +SRRG+A+ PERKVAVLGAAGGIGQPLSLLMKLNPLVS
Sbjct: 1 MRTSMLKSIVRRSSTAGESYVSRRGFASGSAPERKVAVLGAAGGIGQPLSLLMKLNPLVS 60
Query: 285 SLSLYDIAGTPGVAADVSHINTRSEVVGYQGEEQLGKALEGADIVIIPAGVPRKPGMTRD 464
SLSLYDIAGTPGVAADVSHINTRSEVVG+ GEEQLGKALEGADIVIIPAGVPRKPGMTRD
Sbjct: 61 SLSLYDIAGTPGVAADVSHINTRSEVVGFAGEEQLGKALEGADIVIIPAGVPRKPGMTRD 120
Query: 465 DLFNINAGIVKGLCSAIAKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDERRLFGVTT 644
DLFNINAGIVK LC+AIAKYCP+ALVNMISNPVNSTVPIAAEVFKKAGTYDE++LFGVT
Sbjct: 121 DLFNINAGIVKSLCTAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTM 180
Query: 645 LDVVRAKTFYAGKAKVPV 698
LDVVRAKTFYAGKAKV V
Sbjct: 181 LDVVRAKTFYAGKAKVNV 198
>emb|CAD33244.1| putative mitochondrial NAD-dependent malate dehydrogenase [Solanum
tuberosum]
Length = 346
Score = 327 bits (838), Expect = 1e-88
Identities = 167/197 (84%), Positives = 180/197 (90%)
Frame = +3
Query: 108 KPKMMKPSMLRSAVSRCSQLSRRGYATNPVPERKVAVLGAAGGIGQPLSLLMKLNPLVSS 287
+ M+K + RS+ + S +SRRG+A+ PERKVAVLGAAGGIGQPLSL MKLNPLVSS
Sbjct: 2 RTSMLKSIVRRSSTAGASYVSRRGFASGSAPERKVAVLGAAGGIGQPLSLPMKLNPLVSS 61
Query: 288 LSLYDIAGTPGVAADVSHINTRSEVVGYQGEEQLGKALEGADIVIIPAGVPRKPGMTRDD 467
LSLYDIAGTPGVAADVSHINTRSEVVG+ GEEQLGKALEGADIVIIPAGVPRKPGMTRDD
Sbjct: 62 LSLYDIAGTPGVAADVSHINTRSEVVGFAGEEQLGKALEGADIVIIPAGVPRKPGMTRDD 121
Query: 468 LFNINAGIVKGLCSAIAKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDERRLFGVTTL 647
LFNINAGIVK LC+AIAKYCP+ALVNMISNPVNSTVPIAAEVFKKAGTYDE++LFGVT L
Sbjct: 122 LFNINAGIVKSLCTAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTML 181
Query: 648 DVVRAKTFYAGKAKVPV 698
DVVRAKTFYAGKAKV V
Sbjct: 182 DVVRAKTFYAGKAKVNV 198
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 646,845,813
Number of Sequences: 1393205
Number of extensions: 15828470
Number of successful extensions: 56528
Number of sequences better than 10.0: 645
Number of HSP's better than 10.0 without gapping: 52767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56102
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31967457276
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
