Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003999A_C01 KMC003999A_c01
(635 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566099.1| DEAD/DEAH box RNA helicase protein, putative; p... 106 2e-22
pir||H84913 probable ATP-dependent RNA helicase [imported] - Ara... 86 3e-16
dbj|BAA91632.1| unnamed protein product [Homo sapiens] 42 0.009
sp|Q9NVW2|RN12_HUMAN RING finger protein 12 (LIM domain interact... 41 0.012
gb|AAH13357.1|AAH13357 Unknown (protein for MGC:15161) [Homo sap... 41 0.012
>ref|NP_566099.1| DEAD/DEAH box RNA helicase protein, putative; protein id:
At2g47330.1, supported by cDNA: gi_16323191 [Arabidopsis
thaliana] gi|16323192|gb|AAL15330.1| At2g47330/T8I13.17
[Arabidopsis thaliana] gi|20196880|gb|AAB63833.2|
putative ATP-dependent RNA helicase [Arabidopsis
thaliana] gi|21700913|gb|AAM70580.1| At2g47330/T8I13.17
[Arabidopsis thaliana]
Length = 760
Score = 106 bits (265), Expect = 2e-22
Identities = 60/110 (54%), Positives = 77/110 (69%), Gaps = 1/110 (0%)
Frame = -2
Query: 634 APSRSAAVNSLRTGMMSQFKSSFVAAS-SNSQNQGFSNNKNMAANKRPTLAGFVSGGSIG 458
APSRS A+NS+RTG+M+QFK+SFVAA+ SN QNQ + NKRP+L GFVSGG+IG
Sbjct: 661 APSRSGAINSVRTGVMAQFKNSFVAATPSNPQNQAY-------PNKRPSLMGFVSGGTIG 713
Query: 457 GDINRRQFVASTSPAQSAVNSTSQSSGVNPSQTSTNSSKPRERRRPSGWD 308
GD+ R Q + P N++S +S N SQ+S N +PRER+R SGWD
Sbjct: 714 GDMGRTQ--SQAPPVAPTQNASSHNSSQNHSQSSEN--RPRERKRRSGWD 759
>pir||H84913 probable ATP-dependent RNA helicase [imported] - Arabidopsis
thaliana
Length = 748
Score = 86.3 bits (212), Expect = 3e-16
Identities = 49/92 (53%), Positives = 63/92 (68%), Gaps = 1/92 (1%)
Frame = -2
Query: 634 APSRSAAVNSLRTGMMSQFKSSFVAAS-SNSQNQGFSNNKNMAANKRPTLAGFVSGGSIG 458
APSRS A+NS+RTG+M+QFK+SFVAA+ SN QNQ + NKRP+L GFVSGG+IG
Sbjct: 661 APSRSGAINSVRTGVMAQFKNSFVAATPSNPQNQAY-------PNKRPSLMGFVSGGTIG 713
Query: 457 GDINRRQFVASTSPAQSAVNSTSQSSGVNPSQ 362
GD+ R Q + P N++S +S N SQ
Sbjct: 714 GDMGRTQ--SQAPPVAPTQNASSHNSSQNHSQ 743
>dbj|BAA91632.1| unnamed protein product [Homo sapiens]
Length = 624
Score = 41.6 bits (96), Expect = 0.009
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Frame = -2
Query: 622 SAAVNSLRTGMMSQFK--SSFVAASSNSQNQGFSNNKNMAANKRPTLAGFVSGGSIGGDI 449
S A+ ++ +M+ F S F+ + S+S+ G +N+NM + + G GGS G
Sbjct: 399 SVAIQTMLRQIMTGFGELSHFMYSDSDSEPTGSVSNRNMERAESRSGRGGSGGGSSSGSS 458
Query: 448 NRRQFVASTSPAQSAVNSTSQSSGVNPSQTSTN 350
+ +S+S + S+ +S S SSG S+TS++
Sbjct: 459 SSSSSSSSSSSSSSSSSSPSSSSGGESSETSSD 491
>sp|Q9NVW2|RN12_HUMAN RING finger protein 12 (LIM domain interacting RING finger protein)
(RING finger LIM domain-binding protein) (R-LIM)
(NY-REN-43 antigen)
Length = 624
Score = 41.2 bits (95), Expect = 0.012
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Frame = -2
Query: 622 SAAVNSLRTGMMSQFK--SSFVAASSNSQNQGFSNNKNMAANKRPTLAGFVSGGSIGGDI 449
S A+ ++ +M+ F S F+ + S+S+ G +N+NM + + G GGS G
Sbjct: 399 SVAIQTMLRQIMTGFGELSYFMYSDSDSEPTGSVSNRNMERAESRSGRGGSGGGSSSGSS 458
Query: 448 NRRQFVASTSPAQSAVNSTSQSSGVNPSQTSTN 350
+ +S+S + S+ +S S SSG S+TS++
Sbjct: 459 SSSSSSSSSSSSSSSSSSPSSSSGGESSETSSD 491
>gb|AAH13357.1|AAH13357 Unknown (protein for MGC:15161) [Homo sapiens]
Length = 624
Score = 41.2 bits (95), Expect = 0.012
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Frame = -2
Query: 622 SAAVNSLRTGMMSQFK--SSFVAASSNSQNQGFSNNKNMAANKRPTLAGFVSGGSIGGDI 449
S A+ ++ +M+ F S F+ + S+S+ G +N+NM + + G GGS G
Sbjct: 399 SVAIQTMLRQIMTGFGELSYFMYSDSDSEPTGSVSNRNMERAESRSGRGGSGGGSSSGSS 458
Query: 448 NRRQFVASTSPAQSAVNSTSQSSGVNPSQTSTN 350
+ +S+S + S+ +S S SSG S+TS++
Sbjct: 459 SSSSSSSSSSSSSSSSSSPSSSSGGESSETSSD 491
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,767,044
Number of Sequences: 1393205
Number of extensions: 9422561
Number of successful extensions: 29551
Number of sequences better than 10.0: 122
Number of HSP's better than 10.0 without gapping: 26894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29266
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
