Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003998A_C01 KMC003998A_c01
(546 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC04594.1| unnamed protein product [Homo sapiens] 35 0.77
ref|XP_284582.1| RIKEN cDNA B230220N19 gene [Mus musculus] 34 1.3
dbj|BAC30584.1| unnamed protein product [Mus musculus] 33 2.2
ref|NP_230047.1| hypothetical protein [Vibrio cholerae] gi|11355... 32 6.5
ref|NP_798086.1| hypothetical protein [Vibrio parahaemolyticus R... 32 6.5
>dbj|BAC04594.1| unnamed protein product [Homo sapiens]
Length = 134
Score = 34.7 bits (78), Expect = 0.77
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Frame = -1
Query: 240 LFKCFMVKLTFFCLIACHSQCEDVNDK-------CVCIYKIIFLIRCIPVYICIHI 94
++ C V++ C+ C C + CVC+Y +F+ C+ VY+C+ +
Sbjct: 31 VYVCVYVRICVICVCVCVFVCAHMCSCVFVYVCICVCLYVCVFVCVCMYVYLCVFV 86
>ref|XP_284582.1| RIKEN cDNA B230220N19 gene [Mus musculus]
Length = 111
Score = 33.9 bits (76), Expect = 1.3
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 213 TFFCLIACHSQCEDVNDKCVCIYKIIFLIRCIPVYIC 103
T+ CL C+S C V CVCIY + C+ +Y+C
Sbjct: 9 TYVCLCVCNSLCMCV---CVCIYMCV----CVHIYVC 38
Score = 32.0 bits (71), Expect = 5.0
Identities = 13/49 (26%), Positives = 27/49 (54%), Gaps = 2/49 (4%)
Frame = -1
Query: 240 LFKCFMVKL-TFFCLIACHSQCEDVND-KCVCIYKIIFLIRCIPVYICI 100
++ C V + FC+ C +C V+ CVC+Y +++ C+ + +C+
Sbjct: 27 IYMCVCVHIYVCFCMYLCEYECVYVHVCVCVCMYVCMYVCLCVHLCVCV 75
>dbj|BAC30584.1| unnamed protein product [Mus musculus]
Length = 141
Score = 33.1 bits (74), Expect = 2.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 159 CVCIYKIIFLIRCIPVYICIHI 94
CVCIY + L C+ +Y+C++I
Sbjct: 102 CVCIYMYVCLYMCVCIYVCVYI 123
Score = 31.6 bits (70), Expect = 6.5
Identities = 9/22 (40%), Positives = 16/22 (71%)
Frame = -1
Query: 159 CVCIYKIIFLIRCIPVYICIHI 94
CVCIY + + C+ +Y+C++I
Sbjct: 32 CVCIYMCVCIYICVCIYVCVYI 53
>ref|NP_230047.1| hypothetical protein [Vibrio cholerae] gi|11355059|pir||H82328
hypothetical protein VC0393 [imported] - Vibrio cholerae
(strain N16961 serogroup O1) gi|9654813|gb|AAF93566.1|
hypothetical protein [Vibrio cholerae]
Length = 597
Score = 31.6 bits (70), Expect = 6.5
Identities = 13/30 (43%), Positives = 23/30 (76%)
Frame = -2
Query: 362 EWKIFSSSLDMGLHQQKFLLVSLHL*EWSL 273
+W I+S+ L++GLH+QK L+ ++ +WSL
Sbjct: 499 DWDIYSTYLNIGLHEQKAELIQPYI-DWSL 527
>ref|NP_798086.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
gi|28806699|dbj|BAC59970.1| hypothetical protein [Vibrio
parahaemolyticus]
Length = 184
Score = 31.6 bits (70), Expect = 6.5
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 28 LIYKIMLFIGHGTFTSCLSKLRNMYTYIYGDASYEKNY--FIYTYTLVIYIFTLRMT 192
+IY I H F S +L + + +Y DASY + +++ TL++YI RMT
Sbjct: 21 IIYSIYRLYHHFAFESLPRQLSSDFQVVYIDASYVLSIASLLFSPTLLVYILLDRMT 77
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 425,672,862
Number of Sequences: 1393205
Number of extensions: 8669657
Number of successful extensions: 21649
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 20753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21534
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
