Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003995A_C01 KMC003995A_c01
(625 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM54731.1| diphenol oxidase laccase [Glycine max] gi|2202394... 211 5e-54
ref|NP_196158.1| laccase (diphenol oxidase), putative; protein i... 201 6e-51
emb|CAA74104.1| laccase [Populus balsamifera subsp. trichocarpa]... 200 1e-50
ref|NP_181568.1| laccase (diphenol oxidase), putative; protein i... 196 2e-49
dbj|BAB68098.1| putative laccase [Oryza sativa (japonica cultiva... 189 2e-47
>gb|AAM54731.1| diphenol oxidase laccase [Glycine max] gi|22023941|gb|AAM89257.1|
diphenol oxidase laccase [Glycine max]
Length = 589
Score = 211 bits (538), Expect = 5e-54
Identities = 92/108 (85%), Positives = 103/108 (95%)
Frame = -2
Query: 624 TSIVTPENHPIHLHGYDFYVVAEGFGNFNPKKHTSKFNLLDPPMRNTVAVPANGWAVIRF 445
TSIVTPENHPIHLHGYDFY+VAEGFGNF+PKK T+KFNL+DPP+RNTVAVP NGWAVIRF
Sbjct: 482 TSIVTPENHPIHLHGYDFYIVAEGFGNFDPKKDTAKFNLVDPPLRNTVAVPVNGWAVIRF 541
Query: 444 VADNPGAWIMHCHLDVHIGWGLATILLLDNGVGLLESIESPPEDLPLC 301
VADNPGAW++HCHLDVHIGWGLAT+LL++NGVG L+SIE PP DLPLC
Sbjct: 542 VADNPGAWLLHCHLDVHIGWGLATVLLVENGVGKLQSIEPPPVDLPLC 589
>ref|NP_196158.1| laccase (diphenol oxidase), putative; protein id: At5g05390.1
[Arabidopsis thaliana] gi|10176751|dbj|BAB09982.1|
laccase (diphenol oxidase) [Arabidopsis thaliana]
Length = 565
Score = 201 bits (511), Expect = 6e-51
Identities = 87/108 (80%), Positives = 97/108 (89%)
Frame = -2
Query: 624 TSIVTPENHPIHLHGYDFYVVAEGFGNFNPKKHTSKFNLLDPPMRNTVAVPANGWAVIRF 445
T+IVT ENHPIHLHGYDFY+V EGFGNFNPKK TSKFNL+DPP+RNTVAVP NGWAVIRF
Sbjct: 458 TNIVTSENHPIHLHGYDFYIVGEGFGNFNPKKDTSKFNLVDPPLRNTVAVPVNGWAVIRF 517
Query: 444 VADNPGAWIMHCHLDVHIGWGLATILLLDNGVGLLESIESPPEDLPLC 301
VADNPG W+MHCHLDVHI WGLA L+DNGVG LE++E+PP DLP+C
Sbjct: 518 VADNPGVWLMHCHLDVHIKWGLAMAFLVDNGVGELETLEAPPHDLPIC 565
>emb|CAA74104.1| laccase [Populus balsamifera subsp. trichocarpa]
gi|11071906|emb|CAC14720.1| laccase [Populus balsamifera
subsp. trichocarpa]
Length = 574
Score = 200 bits (508), Expect = 1e-50
Identities = 85/108 (78%), Positives = 96/108 (88%)
Frame = -2
Query: 624 TSIVTPENHPIHLHGYDFYVVAEGFGNFNPKKHTSKFNLLDPPMRNTVAVPANGWAVIRF 445
TSIVTPENHPIHLHGYDFY++AEGFGNFNPK SKFNL+DPPMRNTVAVP NGWAVIRF
Sbjct: 467 TSIVTPENHPIHLHGYDFYIIAEGFGNFNPKTDKSKFNLVDPPMRNTVAVPVNGWAVIRF 526
Query: 444 VADNPGAWIMHCHLDVHIGWGLATILLLDNGVGLLESIESPPEDLPLC 301
VADNPG W+MHCHLDVHI WGLA L++ G+G+L+S+E PP DLP+C
Sbjct: 527 VADNPGVWLMHCHLDVHITWGLAMAFLVEEGIGILQSVEPPPADLPIC 574
>ref|NP_181568.1| laccase (diphenol oxidase), putative; protein id: At2g40370.1
[Arabidopsis thaliana] gi|25285554|pir||F84828 probable
laccase (diphenol oxidase) [imported] - Arabidopsis
thaliana gi|4586053|gb|AAD25671.1| putative laccase
(diphenol oxidase) [Arabidopsis thaliana]
gi|21744872|gb|AAM77221.1|AF506030_1 laccase
[Arabidopsis thaliana]
Length = 580
Score = 196 bits (499), Expect = 2e-49
Identities = 83/108 (76%), Positives = 94/108 (86%)
Frame = -2
Query: 624 TSIVTPENHPIHLHGYDFYVVAEGFGNFNPKKHTSKFNLLDPPMRNTVAVPANGWAVIRF 445
T IVTPENHPIHLHGYDFY++AEGFGNFNPKK T+KFNL DPP+RNTV VP NGWAVIRF
Sbjct: 473 TGIVTPENHPIHLHGYDFYIIAEGFGNFNPKKDTAKFNLEDPPLRNTVGVPVNGWAVIRF 532
Query: 444 VADNPGAWIMHCHLDVHIGWGLATILLLDNGVGLLESIESPPEDLPLC 301
+ADNPG WIMHCHLD HI WGLA L++NG G+L++IE PP DLP+C
Sbjct: 533 IADNPGVWIMHCHLDAHISWGLAMAFLVENGNGVLQTIEQPPHDLPVC 580
>dbj|BAB68098.1| putative laccase [Oryza sativa (japonica cultivar-group)]
Length = 567
Score = 189 bits (481), Expect = 2e-47
Identities = 80/108 (74%), Positives = 94/108 (86%)
Frame = -2
Query: 624 TSIVTPENHPIHLHGYDFYVVAEGFGNFNPKKHTSKFNLLDPPMRNTVAVPANGWAVIRF 445
TSIV+PENHPIH+HGYDFY++AEGFGNF+PKK KFN +DPP RNTVAVP NGWAVIRF
Sbjct: 460 TSIVSPENHPIHIHGYDFYILAEGFGNFDPKKDAKKFNYVDPPQRNTVAVPTNGWAVIRF 519
Query: 444 VADNPGAWIMHCHLDVHIGWGLATILLLDNGVGLLESIESPPEDLPLC 301
VADNPG W+MHCHLDVHI WGLA L+++G G LE++E+PP DLP+C
Sbjct: 520 VADNPGVWLMHCHLDVHITWGLAMAFLVEDGYGKLETLEAPPVDLPMC 567
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 592,203,013
Number of Sequences: 1393205
Number of extensions: 13886433
Number of successful extensions: 32508
Number of sequences better than 10.0: 404
Number of HSP's better than 10.0 without gapping: 30908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32203
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
