Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003994A_C01 KMC003994A_c01
(558 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T05998 hypothetical protein F17M5.230 - Arabidopsis thalian... 186 1e-46
ref|NP_567921.1| putative protein; protein id: At4g33470.1, supp... 186 1e-46
ref|NP_711096.1| histone deacetylase family protein [Leptospira ... 70 1e-11
gb|ZP_00010539.1| hypothetical protein [Rhodopseudomonas palustris] 68 9e-11
gb|ZP_00013653.1| hypothetical protein [Rhodospirillum rubrum] 67 1e-10
>pir||T05998 hypothetical protein F17M5.230 - Arabidopsis thaliana
gi|4490314|emb|CAB38805.1| putative protein [Arabidopsis
thaliana] gi|7270295|emb|CAB80064.1| putative protein
[Arabidopsis thaliana]
Length = 359
Score = 186 bits (473), Expect = 1e-46
Identities = 90/114 (78%), Positives = 99/114 (85%)
Frame = -2
Query: 557 CAQRFKPDIILVSAGYDGHVLDPLANLQFTTGTYYMLASSIKQLAKDLCGGRCVFFLEGG 378
CAQRFKPDIILVSAGYD HVLDPLANLQFTT TYY LA IK+LAK++CGGRCVFFLEGG
Sbjct: 246 CAQRFKPDIILVSAGYDAHVLDPLANLQFTTATYYSLAKDIKRLAKEVCGGRCVFFLEGG 305
Query: 377 YNLKSLSYSVADSFRALIGDQSLASEFDNPNILYEEPTAKIKQAIQRIKHIHSL 216
YNL+SLS SVADSFRAL+G+ SLASEFDNP LY+EP K++ AIQR K IH L
Sbjct: 306 YNLESLSSSVADSFRALLGEDSLASEFDNPAYLYDEPMRKVRDAIQRAKSIHCL 359
>ref|NP_567921.1| putative protein; protein id: At4g33470.1, supported by cDNA:
gi_15529219 [Arabidopsis thaliana]
gi|15529220|gb|AAK97704.1| AT4g33470/F17M5_230
[Arabidopsis thaliana] gi|21360523|gb|AAM47377.1|
AT4g33470/F17M5_230 [Arabidopsis thaliana]
Length = 423
Score = 186 bits (473), Expect = 1e-46
Identities = 90/114 (78%), Positives = 99/114 (85%)
Frame = -2
Query: 557 CAQRFKPDIILVSAGYDGHVLDPLANLQFTTGTYYMLASSIKQLAKDLCGGRCVFFLEGG 378
CAQRFKPDIILVSAGYD HVLDPLANLQFTT TYY LA IK+LAK++CGGRCVFFLEGG
Sbjct: 310 CAQRFKPDIILVSAGYDAHVLDPLANLQFTTATYYSLAKDIKRLAKEVCGGRCVFFLEGG 369
Query: 377 YNLKSLSYSVADSFRALIGDQSLASEFDNPNILYEEPTAKIKQAIQRIKHIHSL 216
YNL+SLS SVADSFRAL+G+ SLASEFDNP LY+EP K++ AIQR K IH L
Sbjct: 370 YNLESLSSSVADSFRALLGEDSLASEFDNPAYLYDEPMRKVRDAIQRAKSIHCL 423
>ref|NP_711096.1| histone deacetylase family protein [Leptospira interrogans serovar
lai str. 56601] gi|24194411|gb|AAN48114.1|AE011275_2
histone deacetylase family protein [Leptospira
interrogans serovar lai str. 56601]
Length = 313
Score = 70.5 bits (171), Expect = 1e-11
Identities = 35/75 (46%), Positives = 47/75 (62%)
Frame = -2
Query: 551 QRFKPDIILVSAGYDGHVLDPLANLQFTTGTYYMLASSIKQLAKDLCGGRCVFFLEGGYN 372
+RF+PDI+L+SAG+D H DPL + TT + L I + A +C G+ + FLEGGYN
Sbjct: 235 ERFEPDIVLISAGFDAHKNDPLGGMNITTKGFEDLTRIILESADKICSGKVLSFLEGGYN 294
Query: 371 LKSLSYSVADSFRAL 327
L +LS SV AL
Sbjct: 295 LAALSESVEVHVAAL 309
>gb|ZP_00010539.1| hypothetical protein [Rhodopseudomonas palustris]
Length = 309
Score = 67.8 bits (164), Expect = 9e-11
Identities = 33/77 (42%), Positives = 48/77 (61%)
Frame = -2
Query: 551 QRFKPDIILVSAGYDGHVLDPLANLQFTTGTYYMLASSIKQLAKDLCGGRCVFFLEGGYN 372
+RF P++I++SAG+D H DPLA+L + + + ++A GGR V LEGGY+
Sbjct: 232 KRFSPELIVISAGFDAHYRDPLASLNLRAEDFGWVTERLMEVAAQTAGGRIVSVLEGGYD 291
Query: 371 LKSLSYSVADSFRALIG 321
L+ LS SVA AL+G
Sbjct: 292 LQGLSESVAAHVGALMG 308
>gb|ZP_00013653.1| hypothetical protein [Rhodospirillum rubrum]
Length = 309
Score = 67.0 bits (162), Expect = 1e-10
Identities = 29/74 (39%), Positives = 45/74 (60%)
Frame = -2
Query: 545 FKPDIILVSAGYDGHVLDPLANLQFTTGTYYMLASSIKQLAKDLCGGRCVFFLEGGYNLK 366
F PD+I++SAG+D HV+DP+ANL + + +A D+C R V LEGGY+L
Sbjct: 234 FAPDLIIISAGFDAHVMDPMANLNLKVADFVWATEQVLDVANDVCDSRVVSVLEGGYDLT 293
Query: 365 SLSYSVADSFRALI 324
+L+ V+ + L+
Sbjct: 294 ALASCVSAHVKTLM 307
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 473,201,501
Number of Sequences: 1393205
Number of extensions: 9727743
Number of successful extensions: 23619
Number of sequences better than 10.0: 190
Number of HSP's better than 10.0 without gapping: 22901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23473
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
