Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003990A_C01 KMC003990A_c01
(497 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA98172.1| RAB8A [Lotus japonicus] 199 2e-50
emb|CAA98175.1| RAB8D [Lotus japonicus] 191 5e-48
pir||S57478 GTP-binding protein GTP13 - garden pea gi|871508|emb... 190 7e-48
pir||T14405 small GTP-binding protein rab-1 - turnip gi|1654144|... 190 9e-48
emb|CAA98176.1| RAB8E [Lotus japonicus] 190 9e-48
>emb|CAA98172.1| RAB8A [Lotus japonicus]
Length = 216
Score = 199 bits (505), Expect = 2e-50
Identities = 99/105 (94%), Positives = 103/105 (97%)
Frame = +1
Query: 181 MAGAPAARARADYDYLIKLLLIGDSGVGKSCLLLRFADGSFTTSFITTMGIDFKIRTIEL 360
MAGAPAARARADYDYLIKLLLIGDSGVGKSCLLLRF+DGSFTTSFITT+GIDFKIRTIEL
Sbjct: 1 MAGAPAARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL 60
Query: 361 DGKRIKLRVWDTAGQERFRTITTDYDRGAMGILLVYDVTDEASFN 495
DGKRIKL++WDTAGQERFRTITT Y RGAMGILLVYDVTDEASFN
Sbjct: 61 DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFN 105
>emb|CAA98175.1| RAB8D [Lotus japonicus]
Length = 214
Score = 191 bits (484), Expect = 5e-48
Identities = 94/102 (92%), Positives = 99/102 (96%)
Frame = +1
Query: 190 APAARARADYDYLIKLLLIGDSGVGKSCLLLRFADGSFTTSFITTMGIDFKIRTIELDGK 369
AP ARARADYDYLIKLLLIGDSGVGKSCLLLRF+DGSFTTSFITT+GIDFKIRTIELDGK
Sbjct: 3 APPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK 62
Query: 370 RIKLRVWDTAGQERFRTITTDYDRGAMGILLVYDVTDEASFN 495
R+KL++WDTAGQERFRTITT Y RGAMGILLVYDVTDEASFN
Sbjct: 63 RVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFN 104
>pir||S57478 GTP-binding protein GTP13 - garden pea gi|871508|emb|CAA90082.1|
small GTP-binding protein [Pisum sativum]
Length = 215
Score = 190 bits (483), Expect = 7e-48
Identities = 97/105 (92%), Positives = 101/105 (95%)
Frame = +1
Query: 181 MAGAPAARARADYDYLIKLLLIGDSGVGKSCLLLRFADGSFTTSFITTMGIDFKIRTIEL 360
MA APA RARADYDYLIKLLLIGDSGVGKSCLLLRF+DGSFTTSFITT+GIDFKIRTIEL
Sbjct: 1 MAAAPA-RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL 59
Query: 361 DGKRIKLRVWDTAGQERFRTITTDYDRGAMGILLVYDVTDEASFN 495
DGKRIKL++WDTAGQERFRTITT Y RGAMGILLVYDVTDEASFN
Sbjct: 60 DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFN 104
>pir||T14405 small GTP-binding protein rab-1 - turnip gi|1654144|gb|AAB17726.1|
small GTP-binding protein rab
Length = 222
Score = 190 bits (482), Expect = 9e-48
Identities = 94/102 (92%), Positives = 99/102 (96%)
Frame = +1
Query: 190 APAARARADYDYLIKLLLIGDSGVGKSCLLLRFADGSFTTSFITTMGIDFKIRTIELDGK 369
AP ARARADYDYLIKLLLIGDSGVGKSCLLLRF+DGSFTTSFITT+GIDFKIRTIELDGK
Sbjct: 3 APPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK 62
Query: 370 RIKLRVWDTAGQERFRTITTDYDRGAMGILLVYDVTDEASFN 495
RIKL++WDTAGQERFRTITT Y RGAMGILLVYDVTDE+SFN
Sbjct: 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN 104
>emb|CAA98176.1| RAB8E [Lotus japonicus]
Length = 215
Score = 190 bits (482), Expect = 9e-48
Identities = 94/102 (92%), Positives = 99/102 (96%)
Frame = +1
Query: 190 APAARARADYDYLIKLLLIGDSGVGKSCLLLRFADGSFTTSFITTMGIDFKIRTIELDGK 369
AP ARARADYDYLIKLLLIGDSGVGKSCLLLRF+DGSFTTSFITT+GIDFKIRTIELDGK
Sbjct: 3 APPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK 62
Query: 370 RIKLRVWDTAGQERFRTITTDYDRGAMGILLVYDVTDEASFN 495
RIKL++WDTAGQERFRTITT Y RGAMGILLVYDVTDE+SFN
Sbjct: 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN 104
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 410,517,723
Number of Sequences: 1393205
Number of extensions: 8618253
Number of successful extensions: 32100
Number of sequences better than 10.0: 2181
Number of HSP's better than 10.0 without gapping: 30215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31415
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
