Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003988A_C01 KMC003988A_c01
(600 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO45179.1| transcription factor Myb1 [Malus xiaojinensis] 219 3e-56
gb|AAM65651.1| Myb-related transcription activator, putative [Ar... 189 2e-47
ref|NP_173334.1| myb family transcription factor; protein id: At... 189 2e-47
ref|NP_177622.1| myb family transcription factor; protein id: At... 189 2e-47
ref|NP_177158.1| DNA binding protein MybSt1, putative; protein i... 165 5e-40
>gb|AAO45179.1| transcription factor Myb1 [Malus xiaojinensis]
Length = 302
Score = 219 bits (557), Expect = 3e-56
Identities = 116/177 (65%), Positives = 136/177 (76%), Gaps = 13/177 (7%)
Frame = +2
Query: 107 MMNRSSAADDSAVSGEIMLFGVRVVVDSMRKSVSMNNLSQYELPQDANNNNNSNN----K 274
M + + + + A +GEIMLFGVR+VVDSMRKSVS+NNLSQYE PQ+A +NN +N K
Sbjct: 1 MSSGTCSTVEPAGAGEIMLFGVRLVVDSMRKSVSLNNLSQYEHPQEAASNNGNNGTAAGK 60
Query: 275 DVIAADYASADNAAPPSSG---------VPWTEEEHKLFLVGLQKVGKGDWRGISRNYVK 427
D A YAS ++ S G VPWTEEEHKLFL+GLQK GKGDWRGISRN+VK
Sbjct: 61 DDAAPGYASENDVVHNSGGNRERERKRGVPWTEEEHKLFLLGLQKAGKGDWRGISRNFVK 120
Query: 428 TRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSAIQVEEEQVQNQDTMFHS 598
TRTPTQVASHAQKY+LRRSNLNRRRRRSSLFDITTDTV+ ++EEQVQ+QD + S
Sbjct: 121 TRTPTQVASHAQKYYLRRSNLNRRRRRSSLFDITTDTVAPTPMDEEQVQHQDNISQS 177
>gb|AAM65651.1| Myb-related transcription activator, putative [Arabidopsis
thaliana]
Length = 285
Score = 189 bits (481), Expect = 2e-47
Identities = 106/184 (57%), Positives = 129/184 (69%), Gaps = 24/184 (13%)
Frame = +2
Query: 110 MNRSSAADDSAVSG---EIMLFGVRVVVDSMRKSVSMNNLSQYEL--PQD---------A 247
++ SS D V+G EIMLFGVRVVVD MRK VS+NNLS YE P+D A
Sbjct: 4 VSSSSETGDCGVTGKRDEIMLFGVRVVVDPMRKCVSLNNLSDYEKSSPEDEIPKIVTAGA 63
Query: 248 NNNNNSNNKD---VIAADYASADNAAPPSS-------GVPWTEEEHKLFLVGLQKVGKGD 397
+ + N D ++A YASA++A SS GVPWTE EHK FL+GLQKVGKGD
Sbjct: 64 GDGEDKNETDATVIVADGYASANDAVQISSSSVGRKRGVPWTENEHKRFLIGLQKVGKGD 123
Query: 398 WRGISRNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSAIQVEEEQVQN 577
W+GISRN+VK+RTPTQVASHAQKYFLRR+NLNRRRRRSSLFDITT+TV+ + +E++ Q
Sbjct: 124 WKGISRNFVKSRTPTQVASHAQKYFLRRTNLNRRRRRSSLFDITTETVTEMAMEQDPTQE 183
Query: 578 QDTM 589
+
Sbjct: 184 NSPL 187
>ref|NP_173334.1| myb family transcription factor; protein id: At1g19000.1, supported
by cDNA: 41381., supported by cDNA: gi_15028048,
supported by cDNA: gi_19310830 [Arabidopsis thaliana]
gi|25402872|pir||G86323 protein F14D16.15 [imported] -
Arabidopsis thaliana
gi|8778292|gb|AAF79301.1|AC068602_24 F14D16.15
[Arabidopsis thaliana] gi|15028049|gb|AAK76555.1|
putative Myb-related transcription activator protein
[Arabidopsis thaliana] gi|19310831|gb|AAL85146.1|
putative Myb-related transcription activator protein
[Arabidopsis thaliana]
Length = 285
Score = 189 bits (481), Expect = 2e-47
Identities = 106/184 (57%), Positives = 129/184 (69%), Gaps = 24/184 (13%)
Frame = +2
Query: 110 MNRSSAADDSAVSG---EIMLFGVRVVVDSMRKSVSMNNLSQYEL--PQD---------A 247
++ SS D V+G EIMLFGVRVVVD MRK VS+NNLS YE P+D A
Sbjct: 4 VSSSSETGDCGVTGKRDEIMLFGVRVVVDPMRKCVSLNNLSDYEKSSPEDEIPKIVTAGA 63
Query: 248 NNNNNSNNKD---VIAADYASADNAAPPSS-------GVPWTEEEHKLFLVGLQKVGKGD 397
+ + N D ++A YASA++A SS GVPWTE EHK FL+GLQKVGKGD
Sbjct: 64 GDGEDKNETDATVIVADGYASANDAVQISSSSGGRKRGVPWTENEHKRFLIGLQKVGKGD 123
Query: 398 WRGISRNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSAIQVEEEQVQN 577
W+GISRN+VK+RTPTQVASHAQKYFLRR+NLNRRRRRSSLFDITT+TV+ + +E++ Q
Sbjct: 124 WKGISRNFVKSRTPTQVASHAQKYFLRRTNLNRRRRRSSLFDITTETVTEMAMEQDPTQE 183
Query: 578 QDTM 589
+
Sbjct: 184 NSPL 187
>ref|NP_177622.1| myb family transcription factor; protein id: At1g74840.1, supported
by cDNA: 117643., supported by cDNA: gi_17979192,
supported by cDNA: gi_20465856 [Arabidopsis thaliana]
gi|25406386|pir||H96777 hypothetical protein F9E10.31
[imported] - Arabidopsis thaliana
gi|5882739|gb|AAD55292.1|AC008263_23 Contains PF|00249
Myb-like DNA-binding domain. EST gb|Z18152 comes from
this gene. [Arabidopsis thaliana]
gi|12323911|gb|AAG51937.1|AC013258_31 putative MYB
family transcription factor; 86049-87165 [Arabidopsis
thaliana] gi|17979193|gb|AAL49835.1| putative
myb-related transcription activator protein [Arabidopsis
thaliana] gi|20465857|gb|AAM20033.1| putative
myb-related transcription activator [Arabidopsis
thaliana]
Length = 265
Score = 189 bits (480), Expect = 2e-47
Identities = 105/173 (60%), Positives = 123/173 (70%), Gaps = 13/173 (7%)
Frame = +2
Query: 119 SSAADDSAVSGEIMLFGVRVVVDSMRKSVSMNNLSQYE----LPQDANNNNNSNNKDVIA 286
++A S EIMLFGVRVV+D MRK VS+NNLS YE P+ + + + +
Sbjct: 12 TTACAGSGTRREIMLFGVRVVLDPMRKCVSLNNLSDYEQTAETPKIDGEDRDEQDMNKTP 71
Query: 287 ADYASADNAAPPSS---------GVPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTP 439
A YASAD A P SS GVPWTEEEHKLFL+GLQ+VGKGDW+GISRN+VKTRT
Sbjct: 72 AGYASADEALPMSSSNGKIERKRGVPWTEEEHKLFLLGLQRVGKGDWKGISRNFVKTRTS 131
Query: 440 TQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSAIQVEEEQVQNQDTMFHS 598
TQVASHAQKYFLRRSNLNRRRRRSSLFD+TTDTV ++ E+ QV Q+ S
Sbjct: 132 TQVASHAQKYFLRRSNLNRRRRRSSLFDMTTDTVIPME-EDHQVLIQENTSQS 183
>ref|NP_177158.1| DNA binding protein MybSt1, putative; protein id: At1g70000.1
[Arabidopsis thaliana] gi|25406021|pir||F96722
hypothetical protein F20P5.26 [imported] - Arabidopsis
thaliana gi|2194137|gb|AAB61112.1| ESTs
gb|R29947,gb|H76702 come from this gene. [Arabidopsis
thaliana]
Length = 261
Score = 165 bits (417), Expect = 5e-40
Identities = 90/145 (62%), Positives = 103/145 (70%), Gaps = 5/145 (3%)
Frame = +2
Query: 155 IMLFGVRVVVDS---MRKSVSMNNLSQYELPQDANNNNNSN--NKDVIAADYASADNAAP 319
IMLFGVRV S RKSVSMNNLSQ++ D N ++ + DV+ A + +
Sbjct: 38 IMLFGVRVTEASSSCFRKSVSMNNLSQFDQTPDPNPTDDGGYASDDVVHASGRNRER--- 94
Query: 320 PSSGVPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRSNLNRR 499
G PWTEEEH+LFL GL KVGKGDWRGISRN+VKTRTPTQVASHAQKYFLRR+N NRR
Sbjct: 95 -KRGTPWTEEEHRLFLTGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRTNQNRR 153
Query: 500 RRRSSLFDITTDTVSAIQVEEEQVQ 574
RRRSSLFDIT D+ EE Q+Q
Sbjct: 154 RRRSSLFDITPDSFIGSSKEENQLQ 178
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 547,167,326
Number of Sequences: 1393205
Number of extensions: 13483193
Number of successful extensions: 198627
Number of sequences better than 10.0: 467
Number of HSP's better than 10.0 without gapping: 84111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151455
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
