Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003987A_C02 KMC003987A_c02
(385 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_704275.1| hypothetical protein [Plasmodium falciparum 3D7... 33 1.1
gb|AAM76364.1|AC074196_22 putative nucleoid DNA binding protein ... 31 3.3
gb|EAA38969.1| GLP_205_13412_15397 [Giardia lamblia ATCC 50803] 31 4.3
ref|NP_565983.1| expressed protein; protein id: At2g42770.1, sup... 30 5.7
gb|AAK27319.1|AF211253_1 sucrose:fructan 6-fructosyltransferase ... 30 5.7
>ref|NP_704275.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23499014|emb|CAD51094.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1080
Score = 32.7 bits (73), Expect = 1.1
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Frame = +1
Query: 70 VSSAKVNEIEIRGNSSNAGQPIHVMYNSVKEIQSPWRKLCVVTKANREFDEGYTCSSGHN 249
+ S K N I N++N IH+ NS +P++K + Y C S
Sbjct: 408 MESKKNNNINDNNNNNNNNNNIHISNNSENGKTTPFKKYY-----HNFLSMKYLCDS--- 459
Query: 250 LMRESE--MSPY*FFHPNTYLAFQMNLWSYCRTVLQLS 357
++R S+ +S + H N Y+ + L SYC L L+
Sbjct: 460 IIRSSDNYISSCNYNHNNEYIYMFLVLSSYCHFTLYLN 497
>gb|AAM76364.1|AC074196_22 putative nucleoid DNA binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 382
Score = 31.2 bits (69), Expect = 3.3
Identities = 18/53 (33%), Positives = 29/53 (53%), Gaps = 3/53 (5%)
Frame = +1
Query: 22 SHYLIFSGQLTLILGTVSSAKVNEIEIRGNSSNAG---QPIHVMYNSVKEIQS 171
++YL+ G T+ + SSA++N E+ G S G Q +H +Y+ KE S
Sbjct: 318 TNYLLDVGDDTVCVAIASSARLNSTEVAGMSILGGLQQQNVHFLYDLEKETLS 370
>gb|EAA38969.1| GLP_205_13412_15397 [Giardia lamblia ATCC 50803]
Length = 661
Score = 30.8 bits (68), Expect = 4.3
Identities = 15/51 (29%), Positives = 24/51 (46%)
Frame = +1
Query: 79 AKVNEIEIRGNSSNAGQPIHVMYNSVKEIQSPWRKLCVVTKANREFDEGYT 231
AKV E+R N A QP+ N ++ W+ + + + + DEG T
Sbjct: 485 AKVPSTELRWNGLKADQPVVTRLNMFTQVMQRWKPCGLEIEKSAQEDEGRT 535
>ref|NP_565983.1| expressed protein; protein id: At2g42770.1, supported by cDNA:
2928., supported by cDNA: gi_15450881, supported by
cDNA: gi_20259845 [Arabidopsis thaliana]
gi|15450882|gb|AAK96712.1| Unknown protein [Arabidopsis
thaliana] gi|20197967|gb|AAD21742.2| expressed protein
[Arabidopsis thaliana] gi|20259846|gb|AAM13270.1|
unknown protein [Arabidopsis thaliana]
Length = 232
Score = 30.4 bits (67), Expect = 5.7
Identities = 16/60 (26%), Positives = 32/60 (52%), Gaps = 4/60 (6%)
Frame = +1
Query: 148 NSVKEIQSPWRKLCVVTKANREFDEG--YTCSSGHNLMRESEMSPY*F--FHPNTYLAFQ 315
+++ ++ W+K + +++ E DEG + S H+ +R MS Y F + P +Y +Q
Sbjct: 70 DTIAQLSGRWKKRTALKQSSSELDEGELWNIFSEHDWIRALRMSSYGFLLYGPGSYAWYQ 129
>gb|AAK27319.1|AF211253_1 sucrose:fructan 6-fructosyltransferase [Agropyron cristatum]
Length = 623
Score = 30.4 bits (67), Expect = 5.7
Identities = 16/72 (22%), Positives = 31/72 (42%), Gaps = 2/72 (2%)
Frame = +1
Query: 70 VSSAKVNEIEIRGNSSNAGQPIHV--MYNSVKEIQSPWRKLCVVTKANREFDEGYTCSSG 243
+ + ++N E+ + N G +HV + +I++ + A E D GY CSS
Sbjct: 414 IETLRLNATELSDVTLNTGSLVHVPLRQGTQPDIEATFHLDAAAVAALNEADVGYNCSSS 473
Query: 244 HNLMRESEMSPY 279
+ + P+
Sbjct: 474 GGAVNRGALGPF 485
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 303,616,939
Number of Sequences: 1393205
Number of extensions: 5704558
Number of successful extensions: 13957
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 13747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13956
length of database: 448,689,247
effective HSP length: 103
effective length of database: 305,189,132
effective search space used: 7324539168
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
