Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003986A_C01 KMC003986A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175546.1| hypothetical chloroplast lumen protein; protein... 47 2e-04
pir||E96551 hypothetical protein F11M15.21 [imported] - Arabidop... 32 5.2
ref|NP_070904.1| hypothetical protein [Archaeoglobus fulgidus] g... 32 6.8
gb|AAD51030.1|AF172399_1 p75 neurotrophin receptor a-1 [Xenopus ... 31 8.9
>ref|NP_175546.1| hypothetical chloroplast lumen protein; protein id: At1g51350.1,
supported by cDNA: gi_20260481 [Arabidopsis thaliana]
gi|20260482|gb|AAM13139.1| unknown protein [Arabidopsis
thaliana]
Length = 666
Score = 47.0 bits (110), Expect = 2e-04
Identities = 19/34 (55%), Positives = 27/34 (78%)
Frame = -3
Query: 554 GIVSQVKRMVNDSCMDVKLRARLALGHIITFGDS 453
GI+ Q+K MVND+C+DVK+R R LG ++FGD+
Sbjct: 632 GIIPQLKNMVNDACLDVKIRIRTVLGQSMSFGDN 665
>pir||E96551 hypothetical protein F11M15.21 [imported] - Arabidopsis thaliana
gi|4836950|gb|AAD30652.1|AC006085_25 Hypothetical
protein [Arabidopsis thaliana]
Length = 688
Score = 32.0 bits (71), Expect = 5.2
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = -3
Query: 554 GIVSQVKRMVNDSCMDVK 501
GI+ Q+K MVND+C+DVK
Sbjct: 614 GIIPQLKNMVNDACLDVK 631
>ref|NP_070904.1| hypothetical protein [Archaeoglobus fulgidus]
gi|7450229|pir||G69509 hypothetical protein AF2080 -
Archaeoglobus fulgidus gi|2648458|gb|AAB89179.1| A.
fulgidus predicted coding region AF2080 [Archaeoglobus
fulgidus DSM 4304]
Length = 177
Score = 31.6 bits (70), Expect = 6.8
Identities = 12/41 (29%), Positives = 23/41 (55%)
Frame = +3
Query: 42 NVAYQNPNFVYYYPLDMFAYTNNSRMTMKLSPKIDIHYSYG 164
N+ + F+ P+ +AY NN ++T+++SP + YG
Sbjct: 36 NITSDDNEFIDLTPIQPYAYLNNGKLTIEISPNNPNYPGYG 76
>gb|AAD51030.1|AF172399_1 p75 neurotrophin receptor a-1 [Xenopus laevis]
gi|5759218|gb|AAD51031.1|AF172400_1 p75 neurotrophin
receptor a-2 [Xenopus laevis]
Length = 401
Score = 31.2 bits (69), Expect = 8.9
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Frame = -2
Query: 114 WNCLCKQTCRGGNSRQ-----NLDSGKQHSDSGISTN 19
WN CKQ +GGNS + + K HSDSGIS N
Sbjct: 254 WNS-CKQNKQGGNSHPVNQTPSPEGEKLHSDSGISVN 289
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 485,013,334
Number of Sequences: 1393205
Number of extensions: 10222308
Number of successful extensions: 20580
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20573
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
