Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003984A_C01 KMC003984A_c01
(581 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_726548.1| CG31998-PA [Drosophila melanogaster] gi|2275938... 33 2.0
ref|NP_596007.1| hypothetical protein [Schizosaccharomyces pombe... 33 2.6
prf||2023154B UL53 protein 32 7.6
gb|AAF91255.1| UL53 protein [human herpesvirus 5] 32 7.6
gb|AAF91254.1| UL53 protein [human herpesvirus 5] 32 7.6
>ref|NP_726548.1| CG31998-PA [Drosophila melanogaster] gi|22759388|gb|AAF59363.2|
CG31998-PA [Drosophila melanogaster]
Length = 1459
Score = 33.5 bits (75), Expect = 2.0
Identities = 24/78 (30%), Positives = 37/78 (46%), Gaps = 4/78 (5%)
Frame = +3
Query: 195 YRTTAATFSTRAFASTTPYNCTSGSTSDFKLALWNGFLLYLD-GEANTYREGSCVGS--- 362
+R+ T S+ + AS + +CT+ S SD L GFL + + N + GS V S
Sbjct: 1381 HRSELCTTSSASVASASSNSCTTSSASDSMLVADQGFLRFRSIDDPNCVQNGSNVDSERT 1440
Query: 363 IILKLEILVCHNNVSQAD 416
+L L + C V+ D
Sbjct: 1441 AVLSLRLKSCSATVNGID 1458
>ref|NP_596007.1| hypothetical protein [Schizosaccharomyces pombe]
gi|7491509|pir||T11678 hypothetical protein
SPBC21D10.06c - fission yeast (Schizosaccharomyces
pombe) gi|3560209|emb|CAA20762.1| hypothetical protein
[Schizosaccharomyces pombe]
Length = 948
Score = 33.1 bits (74), Expect = 2.6
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Frame = +3
Query: 156 STTTALSPSEHLYYRTTAATFS-------TRAFASTTPYNCTSGSTS 275
S T +SP+E +Y T ++T S + +F S+TP + TS STS
Sbjct: 241 SLTNTVSPTESTFYETKSSTSSVPTQTIDSSSFTSSTPVSLTSSSTS 287
>prf||2023154B UL53 protein
Length = 376
Score = 31.6 bits (70), Expect = 7.6
Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Frame = +1
Query: 127 ESVATTMAFRAP----PQHYLHQNTCITGPQQQLSAPAHLHPPRLITVQVAQPQILSWH 291
E ++ A R+P P H N C Q S P HLHPP Q QP S H
Sbjct: 297 EEATSSYAIRSPLTASPLHVTSTNGCGPSSSSQ-STPPHLHPPS----QATQPHYYSHH 350
>gb|AAF91255.1| UL53 protein [human herpesvirus 5]
Length = 376
Score = 31.6 bits (70), Expect = 7.6
Identities = 21/59 (35%), Positives = 25/59 (41%), Gaps = 4/59 (6%)
Frame = +1
Query: 127 ESVATTMAFRAP----PQHYLHQNTCITGPQQQLSAPAHLHPPRLITVQVAQPQILSWH 291
E ++ A R+P P H + N C Q S P HLHPP Q QP S H
Sbjct: 297 EEATSSYAIRSPLTASPLHVVSTNGCGPSSSSQ-STPPHLHPPS----QATQPHHYSHH 350
>gb|AAF91254.1| UL53 protein [human herpesvirus 5]
Length = 376
Score = 31.6 bits (70), Expect = 7.6
Identities = 21/59 (35%), Positives = 25/59 (41%), Gaps = 4/59 (6%)
Frame = +1
Query: 127 ESVATTMAFRAP----PQHYLHQNTCITGPQQQLSAPAHLHPPRLITVQVAQPQILSWH 291
E ++ A R+P P H + N C Q S P HLHPP Q QP S H
Sbjct: 297 EEATSSYAIRSPLTASPLHVVSTNGCGPSSSSQ-STPPHLHPPS----QATQPHHYSHH 350
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,516,020
Number of Sequences: 1393205
Number of extensions: 9978703
Number of successful extensions: 23319
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 22241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23285
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
