Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003982A_C01 KMC003982A_c01
(515 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM63845.1| putative signal sequence receptor, alpha subunit ... 166 1e-40
ref|NP_565498.1| putative signal sequence receptor, alpha subuni... 166 1e-40
gb|AAA21820.1| alpha-subunit; putative 166 1e-40
pir||H84597 hypothetical protein At2g21160 [imported] - Arabidop... 166 1e-40
ref|NP_003135.1| signal sequence receptor, alpha; TRAP alpha [Ho... 51 9e-06
>gb|AAM63845.1| putative signal sequence receptor, alpha subunit (SSR-alpha)
[Arabidopsis thaliana]
Length = 258
Score = 166 bits (420), Expect = 1e-40
Identities = 86/153 (56%), Positives = 111/153 (72%), Gaps = 7/153 (4%)
Frame = +3
Query: 78 ILSLALLFLASPLLQVAMCQSDSDGAVDATDEASDIGIVGDDAQDYGGE-------TFTS 236
+L LALL LASPLLQVA CQSD++ D+ +VG++ D E +S
Sbjct: 6 VLFLALLLLASPLLQVARCQSDAEDHSSLVDD-----VVGENTDDAVEEDDHDLDMNLSS 60
Query: 237 APGIETISVFPKNSARLVTAGEDTELLVGVKNNGESSLNVVAIRASVHLPFDHRMLVQNL 416
PG+ET+ VFPKNSA+LV AGE+TELLVG+KN G++ + V+ IRASVHLP+DH++LVQNL
Sbjct: 61 FPGVETVCVFPKNSAKLVPAGEETELLVGLKNEGKTRVGVMGIRASVHLPYDHKLLVQNL 120
Query: 417 TAQIFNNGSVPSSAQATFPYLFAVSKFLQPGTF 515
T NN S+P+S QATFPY+FAVS++LQPG F
Sbjct: 121 TMLRLNNASIPTSLQATFPYIFAVSQYLQPGAF 153
>ref|NP_565498.1| putative signal sequence receptor, alpha subunit (SSR-alpha);
protein id: At2g21160.1, supported by cDNA: 27787.,
supported by cDNA: gi_15215645 [Arabidopsis thaliana]
gi|26007030|sp|P45434|SSRA_ARATH Translocon-associated
protein, alpha subunit precursor (TRAP-alpha) (Signal
sequence receptor alpha subunit) (SSR-alpha)
gi|15215646|gb|AAK91368.1| At2g21160/F26H11.8
[Arabidopsis thaliana] gi|20197721|gb|AAD29800.2|
putative signal sequence receptor, alpha subunit
(SSR-alpha) [Arabidopsis thaliana]
Length = 258
Score = 166 bits (420), Expect = 1e-40
Identities = 86/153 (56%), Positives = 111/153 (72%), Gaps = 7/153 (4%)
Frame = +3
Query: 78 ILSLALLFLASPLLQVAMCQSDSDGAVDATDEASDIGIVGDDAQDYGGE-------TFTS 236
+L LALL LASPLLQVA CQSD++ D+ +VG++ D E +S
Sbjct: 6 VLFLALLLLASPLLQVARCQSDAEDHSSLVDD-----VVGENTDDAVEEDDHDLDMNLSS 60
Query: 237 APGIETISVFPKNSARLVTAGEDTELLVGVKNNGESSLNVVAIRASVHLPFDHRMLVQNL 416
PG+ET+ VFPKNSA+LV AGE+TELLVG+KN G++ + V+ IRASVHLP+DH++LVQNL
Sbjct: 61 FPGVETVCVFPKNSAKLVPAGEETELLVGLKNEGKTRVGVMGIRASVHLPYDHKLLVQNL 120
Query: 417 TAQIFNNGSVPSSAQATFPYLFAVSKFLQPGTF 515
T NN S+P+S QATFPY+FAVS++LQPG F
Sbjct: 121 TMLRLNNASIPTSLQATFPYIFAVSQYLQPGAF 153
>gb|AAA21820.1| alpha-subunit; putative
Length = 253
Score = 166 bits (420), Expect = 1e-40
Identities = 86/153 (56%), Positives = 111/153 (72%), Gaps = 7/153 (4%)
Frame = +3
Query: 78 ILSLALLFLASPLLQVAMCQSDSDGAVDATDEASDIGIVGDDAQDYGGE-------TFTS 236
+L LALL LASPLLQVA CQSD++ D+ +VG++ D E +S
Sbjct: 1 VLFLALLLLASPLLQVARCQSDAEDHSSLVDD-----VVGENTDDAVEEDDHDLDMNLSS 55
Query: 237 APGIETISVFPKNSARLVTAGEDTELLVGVKNNGESSLNVVAIRASVHLPFDHRMLVQNL 416
PG+ET+ VFPKNSA+LV AGE+TELLVG+KN G++ + V+ IRASVHLP+DH++LVQNL
Sbjct: 56 FPGVETVCVFPKNSAKLVPAGEETELLVGLKNEGKTRVGVMGIRASVHLPYDHKLLVQNL 115
Query: 417 TAQIFNNGSVPSSAQATFPYLFAVSKFLQPGTF 515
T NN S+P+S QATFPY+FAVS++LQPG F
Sbjct: 116 TMLRLNNASIPTSLQATFPYIFAVSQYLQPGAF 148
>pir||H84597 hypothetical protein At2g21160 [imported] - Arabidopsis thaliana
Length = 257
Score = 166 bits (420), Expect = 1e-40
Identities = 86/153 (56%), Positives = 111/153 (72%), Gaps = 7/153 (4%)
Frame = +3
Query: 78 ILSLALLFLASPLLQVAMCQSDSDGAVDATDEASDIGIVGDDAQDYGGE-------TFTS 236
+L LALL LASPLLQVA CQSD++ D+ +VG++ D E +S
Sbjct: 5 VLFLALLLLASPLLQVARCQSDAEDHSSLVDD-----VVGENTDDAVEEDDHDLDMNLSS 59
Query: 237 APGIETISVFPKNSARLVTAGEDTELLVGVKNNGESSLNVVAIRASVHLPFDHRMLVQNL 416
PG+ET+ VFPKNSA+LV AGE+TELLVG+KN G++ + V+ IRASVHLP+DH++LVQNL
Sbjct: 60 FPGVETVCVFPKNSAKLVPAGEETELLVGLKNEGKTRVGVMGIRASVHLPYDHKLLVQNL 119
Query: 417 TAQIFNNGSVPSSAQATFPYLFAVSKFLQPGTF 515
T NN S+P+S QATFPY+FAVS++LQPG F
Sbjct: 120 TMLRLNNASIPTSLQATFPYIFAVSQYLQPGAF 152
>ref|NP_003135.1| signal sequence receptor, alpha; TRAP alpha [Homo sapiens]
gi|7459538|pir||I38246 signal sequence receptor alpha
chain precursor - human gi|551638|emb|CAA78290.1| SSR
alpha subunit [Homo sapiens]
Length = 286
Score = 50.8 bits (120), Expect = 9e-06
Identities = 38/119 (31%), Positives = 54/119 (44%)
Frame = +3
Query: 126 AMCQSDSDGAVDATDEASDIGIVGDDAQDYGGETFTSAPGIETISVFPKNSARLVTAGED 305
++ + + D A DE +D+ + + +D GE S P +T +F K A
Sbjct: 45 SIIEDEDDEAEVEEDEPTDL-VEDKEEEDVSGEPEAS-PSADTTILFVKGED--FPANNI 100
Query: 306 TELLVGVKNNGESSLNVVAIRASVHLPFDHRMLVQNLTAQIFNNGSVPSSAQATFPYLF 482
+ LVG N G V ++ AS P DH+ +QN TA N VP QATF Y F
Sbjct: 101 VKFLVGFTNKGTEDFIVESLDASFRYPQDHQFYIQNFTALPLNT-VVPPQRQATFEYSF 158
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 446,681,373
Number of Sequences: 1393205
Number of extensions: 9607913
Number of successful extensions: 41403
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 34893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39655
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
