Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003981A_C01 KMC003981A_c01
(544 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM60856.1| unknown [Arabidopsis thaliana] 154 9e-37
ref|NP_199772.1| putative protein; protein id: At5g49610.1, supp... 154 9e-37
ref|NP_005919.1| milk fat globule-EGF factor 8 protein; lactadhe... 35 0.45
pir||A47285 milk fat globule protein - human (fragment) gi|23539... 35 0.45
ref|XP_211696.1| hypothetical protein XP_211696 [Homo sapiens] 33 2.9
>gb|AAM60856.1| unknown [Arabidopsis thaliana]
Length = 359
Score = 154 bits (388), Expect = 9e-37
Identities = 67/98 (68%), Positives = 83/98 (84%)
Frame = -3
Query: 542 SIIQISEAWMNIWVLKDYWNDEWCMVDKVSLRCIRGMVPGIFPISQTGEYVFLATHRQVL 363
S+IQ+S+ WM IW + +Y + W +VD +SLRCI+G+VPGIFPI QTGEYVFLATH+QVL
Sbjct: 262 SVIQLSDVWMKIWKMSEYETETWSVVDSISLRCIKGLVPGIFPICQTGEYVFLATHKQVL 321
Query: 362 VYHRNSKVWKEMYSVKYSSSLPLWFSAHAYRSTMFSCS 249
VY R SK+WKEM+SVK SSSLPLWFSAHA+RST+ C+
Sbjct: 322 VYQRRSKLWKEMFSVKGSSSLPLWFSAHAFRSTIVPCN 359
>ref|NP_199772.1| putative protein; protein id: At5g49610.1, supported by cDNA:
101665. [Arabidopsis thaliana]
gi|10177628|dbj|BAB10775.1|
gb|AAF30317.1~gene_id:K6M13.17~similar to unknown
protein [Arabidopsis thaliana]
Length = 359
Score = 154 bits (388), Expect = 9e-37
Identities = 67/98 (68%), Positives = 83/98 (84%)
Frame = -3
Query: 542 SIIQISEAWMNIWVLKDYWNDEWCMVDKVSLRCIRGMVPGIFPISQTGEYVFLATHRQVL 363
S+IQ+S+ WM IW + +Y + W +VD +SLRCI+G+VPGIFPI QTGEYVFLATH+QVL
Sbjct: 262 SVIQLSDVWMKIWKMSEYETETWSVVDSISLRCIKGLVPGIFPICQTGEYVFLATHKQVL 321
Query: 362 VYHRNSKVWKEMYSVKYSSSLPLWFSAHAYRSTMFSCS 249
VY R SK+WKEM+SVK SSSLPLWFSAHA+RST+ C+
Sbjct: 322 VYQRRSKLWKEMFSVKGSSSLPLWFSAHAFRSTIVPCN 359
>ref|NP_005919.1| milk fat globule-EGF factor 8 protein; lactadherin; medin [Homo
sapiens] gi|2506380|sp|Q08431|MFGM_HUMAN Lactadherin
precursor (Milk fat globule-EGF factor 8) (MFG-E8)
(HMFG) (Breast epithelial antigen BA46) (MFGM)
[Contains: Medin] gi|1381162|gb|AAC50549.1| BA46
gi|23092553|gb|AAN08508.1| epididymal protein [Homo
sapiens] gi|1589428|prf||2211263A breast epithelial BA46
antigen
Length = 387
Score = 35.4 bits (80), Expect = 0.45
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Frame = -3
Query: 512 NIWVLKDYWNDEWCMVDKVSLRCIRGMVPGIFPISQTGEYVFLATHRQVLVYHRNSKVWK 333
N WV Y ND+W VD S + + G++ G F+A+++ + Y +S W
Sbjct: 276 NAWVAGSYGNDQWLQVDLGSSKEVTGIITQ--GARNFGSVQFVASYK--VAYSNDSANWT 331
Query: 332 EMYSVKYSSS--LPLWFSAHAYRSTMF 258
E + SS P + H+++ +F
Sbjct: 332 EYQDPRTGSSKIFPGNWDNHSHKKNLF 358
>pir||A47285 milk fat globule protein - human (fragment)
gi|235397|gb|AAB19771.1| HMFG [Homo sapiens]
Length = 218
Score = 35.4 bits (80), Expect = 0.45
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Frame = -3
Query: 512 NIWVLKDYWNDEWCMVDKVSLRCIRGMVPGIFPISQTGEYVFLATHRQVLVYHRNSKVWK 333
N WV Y ND+W VD S + + G++ G F+A+++ + Y +S W
Sbjct: 107 NAWVAGSYGNDQWLQVDLGSSKEVTGIITQ--GARNFGSVQFVASYK--VAYSNDSANWT 162
Query: 332 EMYSVKYSSS--LPLWFSAHAYRSTMF 258
E + SS P + H+++ +F
Sbjct: 163 EYQDPRTGSSKIFPGNWDNHSHKKNLF 189
>ref|XP_211696.1| hypothetical protein XP_211696 [Homo sapiens]
Length = 293
Score = 32.7 bits (73), Expect = 2.9
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +3
Query: 357 IHQNLPMSSQKNIFTCLTDRENPRHHSSDTPQTHLIHHAPFIIPVIFQHPNVHP 518
IH ++ S ++ C+ NP H S P TH H+P I P I HP++HP
Sbjct: 122 IHPSIHPSIHPSMHPCIHP-SNPSIHPSIHPSTHPATHSP-ICPSI--HPSIHP 171
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,348,389
Number of Sequences: 1393205
Number of extensions: 10752582
Number of successful extensions: 24844
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 24065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24840
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
