Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003980A_C01 KMC003980A_c01
(683 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC03581.1| putative 1-deoxy-D-xylulose 5-phosphate reductoi... 267 9e-71
gb|AAL37560.1|AF367205_1 1-deoxy-D-xylulose 5-phosphate reductoi... 264 1e-69
dbj|BAB16915.1| 1-deoxy-d-xylulose-5-phosphate reductoisomerase ... 264 1e-69
pir||T52570 1-deoxy-d-xylulose-5-phosphate reductoisomerase [imp... 260 1e-68
ref|NP_201085.1| 1-deoxy-D-xylulose 5-phosphate reductoisomerase... 260 1e-68
>emb|CAC03581.1| putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Zea mays]
Length = 472
Score = 267 bits (683), Expect = 9e-71
Identities = 127/143 (88%), Positives = 136/143 (94%)
Frame = -2
Query: 682 SVLAQLGWPDMRLPILYTLSWPDRIYCSEVTWPRLDLCKLGSLTFKAPDNVKYPSVNLAY 503
SVLAQLGWPDMRLPILYTLSWPDRIYCSEVTWPRLDLCKLGSLTF+APDNVKYPS++LAY
Sbjct: 330 SVLAQLGWPDMRLPILYTLSWPDRIYCSEVTWPRLDLCKLGSLTFRAPDNVKYPSMDLAY 389
Query: 502 AAGRAGGTMTGVLSAANEKAVEMFIDEKISYLDIFKVVELTCEKHQNELRTSPSLEEIIH 323
AAGRAGGTMTGVLSAANEKAVE+FIDEKISYLDIFKVVELTC H+NEL TSPSLEEI+H
Sbjct: 390 AAGRAGGTMTGVLSAANEKAVELFIDEKISYLDIFKVVELTCNAHRNELVTSPSLEEIVH 449
Query: 322 YDLWAREYAASLQNTSSFTPIPA 254
YDLWAR YAASLQ +S +P+PA
Sbjct: 450 YDLWARRYAASLQPSSGLSPVPA 472
>gb|AAL37560.1|AF367205_1 1-deoxy-D-xylulose 5-phosphate reductoisomerase precursor [Oryza
sativa]
Length = 473
Score = 264 bits (674), Expect = 1e-69
Identities = 124/142 (87%), Positives = 135/142 (94%)
Frame = -2
Query: 682 SVLAQLGWPDMRLPILYTLSWPDRIYCSEVTWPRLDLCKLGSLTFKAPDNVKYPSVNLAY 503
SVLAQLGWPDMR+PILYT+SWPDRIYCSEVTWPRLDLCKLGSLTFKAPDNVKYPS++LAY
Sbjct: 331 SVLAQLGWPDMRIPILYTMSWPDRIYCSEVTWPRLDLCKLGSLTFKAPDNVKYPSMDLAY 390
Query: 502 AAGRAGGTMTGVLSAANEKAVEMFIDEKISYLDIFKVVELTCEKHQNELRTSPSLEEIIH 323
AAGRAGGTMTGVLSAANEKAVE+FIDEKI YLDIFKVVELTC+ H+NEL T PSLEEIIH
Sbjct: 391 AAGRAGGTMTGVLSAANEKAVELFIDEKIGYLDIFKVVELTCDAHRNELVTRPSLEEIIH 450
Query: 322 YDLWAREYAASLQNTSSFTPIP 257
YDLWAREYAASLQ ++ +P+P
Sbjct: 451 YDLWAREYAASLQPSTGLSPVP 472
>dbj|BAB16915.1| 1-deoxy-d-xylulose-5-phosphate reductoisomerase [Oryza sativa
(japonica cultivar-group)] gi|17385653|dbj|BAB78606.1|
1-deoxy-d-xylulose-5-phosphate reductoisomerase [Oryza
sativa (japonica cultivar-group)]
Length = 473
Score = 264 bits (674), Expect = 1e-69
Identities = 124/142 (87%), Positives = 135/142 (94%)
Frame = -2
Query: 682 SVLAQLGWPDMRLPILYTLSWPDRIYCSEVTWPRLDLCKLGSLTFKAPDNVKYPSVNLAY 503
SVLAQLGWPDMR+PILYT+SWPDRIYCSEVTWPRLDLCKLGSLTFKAPDNVKYPS++LAY
Sbjct: 331 SVLAQLGWPDMRIPILYTMSWPDRIYCSEVTWPRLDLCKLGSLTFKAPDNVKYPSMDLAY 390
Query: 502 AAGRAGGTMTGVLSAANEKAVEMFIDEKISYLDIFKVVELTCEKHQNELRTSPSLEEIIH 323
AAGRAGGTMTGVLSAANEKAVE+FIDEKI YLDIFKVVELTC+ H+NEL T PSLEEIIH
Sbjct: 391 AAGRAGGTMTGVLSAANEKAVELFIDEKIGYLDIFKVVELTCDAHRNELVTRPSLEEIIH 450
Query: 322 YDLWAREYAASLQNTSSFTPIP 257
YDLWAREYAASLQ ++ +P+P
Sbjct: 451 YDLWAREYAASLQPSTGLSPVP 472
>pir||T52570 1-deoxy-d-xylulose-5-phosphate reductoisomerase [imported] -
Arabidopsis thaliana (fragment)
gi|4886307|emb|CAB43344.1|
1-deoxy-d-xylulose-5-phosphate reductoisomerase
[Arabidopsis thaliana]
Length = 406
Score = 260 bits (664), Expect = 1e-68
Identities = 124/143 (86%), Positives = 135/143 (93%)
Frame = -2
Query: 682 SVLAQLGWPDMRLPILYTLSWPDRIYCSEVTWPRLDLCKLGSLTFKAPDNVKYPSVNLAY 503
SVLAQLGWPDMRLPILYT+SWPDR+ CSEVTWPRLDLCKLGSLTFK PDNVKYPS++LAY
Sbjct: 264 SVLAQLGWPDMRLPILYTMSWPDRVPCSEVTWPRLDLCKLGSLTFKKPDNVKYPSMDLAY 323
Query: 502 AAGRAGGTMTGVLSAANEKAVEMFIDEKISYLDIFKVVELTCEKHQNELRTSPSLEEIIH 323
AAGRAGGTMTGVLSAANEKAVEMFIDEKISYLDIFKVVELTC+KH+NEL TSPSLEEI+H
Sbjct: 324 AAGRAGGTMTGVLSAANEKAVEMFIDEKISYLDIFKVVELTCDKHRNELVTSPSLEEIVH 383
Query: 322 YDLWAREYAASLQNTSSFTPIPA 254
YDLWAREYAA++Q +S P+ A
Sbjct: 384 YDLWAREYAANVQLSSGARPVHA 406
>ref|NP_201085.1| 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXR); protein id:
At5g62790.1, supported by cDNA: 117626., supported by
cDNA: gi_15010665, supported by cDNA: gi_15292736,
supported by cDNA: gi_15451203, supported by cDNA:
gi_20148248, supported by cDNA: gi_20259652, supported
by cDNA: gi_20466080 [Arabidopsis thaliana]
gi|12644032|sp|Q9XFS9|DXR_ARATH 1-deoxy-D-xylulose
5-phosphate reductoisomerase, chloroplast precursor (DXP
reductoisomerase) (1-deoxyxylulose-5-phosphate
reductoisomerase) gi|8131928|gb|AAF73140.1|AF148852_1
1-deoxy-D-xylulose 5-phosphate reductoisomerase
[Arabidopsis thaliana] gi|10177457|dbj|BAB10848.1|
1-deoxy-D-xylulose 5-phosphate reductoisomerase
[Arabidopsis thaliana] gi|15010666|gb|AAK73992.1|
AT5g62790/MQB2_90 [Arabidopsis thaliana]
gi|15292737|gb|AAK92737.1| putative 1-deoxy-D-xylulose
5-phosphate reductoisomerase DXR [Arabidopsis thaliana]
gi|15451204|gb|AAK96873.1| 1-deoxy-D-xylulose
5-phosphate reductoisomerase [Arabidopsis thaliana]
gi|20148249|gb|AAM10015.1| 1-deoxy-D-xylulose
5-phosphate reductoisomerase [Arabidopsis thaliana]
gi|20259653|gb|AAM14344.1| putative 1-deoxy-D-xylulose
5-phosphate reductoisomerase (DXR) [Arabidopsis
thaliana] gi|20466081|gb|AAM19962.1| AT5g62790/MQB2_90
[Arabidopsis thaliana] gi|21537002|gb|AAM61343.1|
1-deoxy-D-xylulose 5-phosphate reductoisomerase DXR
[Arabidopsis thaliana]
Length = 477
Score = 260 bits (664), Expect = 1e-68
Identities = 124/143 (86%), Positives = 135/143 (93%)
Frame = -2
Query: 682 SVLAQLGWPDMRLPILYTLSWPDRIYCSEVTWPRLDLCKLGSLTFKAPDNVKYPSVNLAY 503
SVLAQLGWPDMRLPILYT+SWPDR+ CSEVTWPRLDLCKLGSLTFK PDNVKYPS++LAY
Sbjct: 335 SVLAQLGWPDMRLPILYTMSWPDRVPCSEVTWPRLDLCKLGSLTFKKPDNVKYPSMDLAY 394
Query: 502 AAGRAGGTMTGVLSAANEKAVEMFIDEKISYLDIFKVVELTCEKHQNELRTSPSLEEIIH 323
AAGRAGGTMTGVLSAANEKAVEMFIDEKISYLDIFKVVELTC+KH+NEL TSPSLEEI+H
Sbjct: 395 AAGRAGGTMTGVLSAANEKAVEMFIDEKISYLDIFKVVELTCDKHRNELVTSPSLEEIVH 454
Query: 322 YDLWAREYAASLQNTSSFTPIPA 254
YDLWAREYAA++Q +S P+ A
Sbjct: 455 YDLWAREYAANVQLSSGARPVHA 477
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 539,015,654
Number of Sequences: 1393205
Number of extensions: 10706550
Number of successful extensions: 27208
Number of sequences better than 10.0: 124
Number of HSP's better than 10.0 without gapping: 26436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27095
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30552968016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
