KMC003979A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC003979A_C01 KMC003979A_c01
ctctctctCTCAGTCACAGCTCAGCTCAGAGTGAGAACACTTCACAGATCTGGGGCGGTG
ACTCAAGAGATCTCCACCTTCCTTCATTTCATTTCAGTATCAATCAGGTCCATCGGCTCA
TTGCTATTATCATGTCAAGGAGGCCAGTAAATCCTTCACGCCGGTTAGCTGATGGTGGAA
GTATATCATTTGTGTCCTCTATCAAGGCTAAATCTCAGAACTCTCCTCTACTATCTATTG
GGCTTGTGATAGTGGGTGCAATCCTCCTCATTGGTTTTATTTATAGCAGCTCAGGTGGAT
CTAGTGGTGATATTAAGGATGTAAGCAAACTTGAAGGTGGTGCATCATGCACTTCAGAAG
TCCTACATGCATTGCCCATTTTGAAGAAAGCATATGGAGACAGCATGCGAAAGGTTTTGC
ATGTTGGCCCAGACTCTTGTTTGCTGGTACCGAGTTTGTTAGAAGAGGATACTGAGGTTT
GGGGAATAGAACCATATGAATTAGATGATGTAAGTGCAAAGTGTAA


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC003979A_C01 KMC003979A_c01
         (526 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_566924.1| expressed protein; protein id: At3g49720.1, sup...   154  5e-37
dbj|BAB09049.1| emb|CAB66910.1~gene_id:K22J17.2~similar to unkno...   147  7e-35
ref|NP_569020.1| putative protein; protein id: At5g65810.1, supp...   147  7e-35
gb|AAM65141.1| unknown [Arabidopsis thaliana]                         147  7e-35
dbj|BAB16471.1| P0019D06.30 [Oryza sativa (japonica cultivar-gro...   135  2e-31

>ref|NP_566924.1| expressed protein; protein id: At3g49720.1, supported by cDNA:
           35598. [Arabidopsis thaliana] gi|11285664|pir||T46038
           hypothetical protein T16K5.70 - Arabidopsis thaliana
           gi|6723417|emb|CAB66910.1| hypothetical protein
           [Arabidopsis thaliana] gi|21593048|gb|AAM64997.1|
           unknown [Arabidopsis thaliana]
          Length = 261

 Score =  154 bits (390), Expect = 5e-37
 Identities = 77/132 (58%), Positives = 100/132 (75%), Gaps = 1/132 (0%)
 Frame = +3

Query: 132 MSRRPVNPSRRLADGGSISFVSSIKAKSQNSPLLSIGLVIVGAILLIGFIYSSSGGSSGD 311
           M+RR V  +RR+ DGGS  F  ++ +KS++SPLLSI LV+VGA LLIG+ YS  G     
Sbjct: 1   MARRQVGSTRRVGDGGSFPFAGALHSKSRSSPLLSICLVLVGACLLIGYAYSGPGIFKS- 59

Query: 312 IKDVSKLEGGASCTSEVLHALPILKKAYGDSMRKVLHVGPDSCLLVPSLL-EEDTEVWGI 488
           IK+VSK+ G  SCT+EV  A+P+LKKAYGD MRKVLHVGPD+C +V SLL EE+TE WG+
Sbjct: 60  IKEVSKVTGDYSCTAEVQRAIPVLKKAYGDGMRKVLHVGPDTCSVVSSLLKEEETEAWGV 119

Query: 489 EPYELDDVSAKC 524
           EPY+++D  + C
Sbjct: 120 EPYDIEDADSHC 131

>dbj|BAB09049.1| emb|CAB66910.1~gene_id:K22J17.2~similar to unknown protein
           [Arabidopsis thaliana]
          Length = 219

 Score =  147 bits (371), Expect = 7e-35
 Identities = 76/132 (57%), Positives = 99/132 (74%), Gaps = 1/132 (0%)
 Frame = +3

Query: 132 MSRRPVNPSRRLADGGSISFVSSIKAKSQNSPLLSIGLVIVGAILLIGFIYSSSGGSSGD 311
           MSRR V   RR+ D GS  FV ++ +KS++SPLLS+ LV+VGA LLIG+ YS  G     
Sbjct: 1   MSRRQV---RRVGDSGSFPFVGALHSKSRSSPLLSVCLVLVGACLLIGYAYSGPGMFKS- 56

Query: 312 IKDVSKLEGGASCTSEVLHALPILKKAYGDSMRKVLHVGPDSCLLVPSLL-EEDTEVWGI 488
           I++VSK+ G  SCT+EV  A+PILK AYGDSMRKVLHVGP++C +V SLL EE+TE WG+
Sbjct: 57  IREVSKITGDYSCTAEVQRAIPILKSAYGDSMRKVLHVGPETCSVVSSLLNEEETEAWGV 116

Query: 489 EPYELDDVSAKC 524
           EPY+++D  + C
Sbjct: 117 EPYDVEDADSNC 128

>ref|NP_569020.1| putative protein; protein id: At5g65810.1, supported by cDNA:
           36946. [Arabidopsis thaliana]
          Length = 258

 Score =  147 bits (371), Expect = 7e-35
 Identities = 76/132 (57%), Positives = 99/132 (74%), Gaps = 1/132 (0%)
 Frame = +3

Query: 132 MSRRPVNPSRRLADGGSISFVSSIKAKSQNSPLLSIGLVIVGAILLIGFIYSSSGGSSGD 311
           MSRR V   RR+ D GS  FV ++ +KS++SPLLS+ LV+VGA LLIG+ YS  G     
Sbjct: 1   MSRRQV---RRVGDSGSFPFVGALHSKSRSSPLLSVCLVLVGACLLIGYAYSGPGMFKS- 56

Query: 312 IKDVSKLEGGASCTSEVLHALPILKKAYGDSMRKVLHVGPDSCLLVPSLL-EEDTEVWGI 488
           I++VSK+ G  SCT+EV  A+PILK AYGDSMRKVLHVGP++C +V SLL EE+TE WG+
Sbjct: 57  IREVSKITGDYSCTAEVQRAIPILKSAYGDSMRKVLHVGPETCSVVSSLLNEEETEAWGV 116

Query: 489 EPYELDDVSAKC 524
           EPY+++D  + C
Sbjct: 117 EPYDVEDADSNC 128

>gb|AAM65141.1| unknown [Arabidopsis thaliana]
          Length = 258

 Score =  147 bits (371), Expect = 7e-35
 Identities = 76/132 (57%), Positives = 99/132 (74%), Gaps = 1/132 (0%)
 Frame = +3

Query: 132 MSRRPVNPSRRLADGGSISFVSSIKAKSQNSPLLSIGLVIVGAILLIGFIYSSSGGSSGD 311
           MSRR V   RR+ D GS  FV ++ +KS++SPLLS+ LV+VGA LLIG+ YS  G     
Sbjct: 1   MSRRQV---RRVGDSGSFPFVGALHSKSRSSPLLSVCLVLVGACLLIGYAYSGPGMFKS- 56

Query: 312 IKDVSKLEGGASCTSEVLHALPILKKAYGDSMRKVLHVGPDSCLLVPSLL-EEDTEVWGI 488
           I++VSK+ G  SCT+EV  A+PILK AYGDSMRKVLHVGP++C +V SLL EE+TE WG+
Sbjct: 57  IREVSKITGDYSCTAEVQRAIPILKSAYGDSMRKVLHVGPETCSVVSSLLNEEETEAWGV 116

Query: 489 EPYELDDVSAKC 524
           EPY+++D  + C
Sbjct: 117 EPYDVEDADSNC 128

>dbj|BAB16471.1| P0019D06.30 [Oryza sativa (japonica cultivar-group)]
           gi|13486897|dbj|BAB40126.1| P0024G09.18 [Oryza sativa
           (japonica cultivar-group)]
          Length = 258

 Score =  135 bits (341), Expect = 2e-31
 Identities = 70/132 (53%), Positives = 93/132 (70%), Gaps = 1/132 (0%)
 Frame = +3

Query: 132 MSRRPVNPSRRLADGGSISFVSSIKAKSQNSPLLSIGLVIVGAILLIGFIYSSSGGSSGD 311
           MSRR VNPSRR+ADGG  S    +  KS++ P+L+I LV++G I+LI +  S SG +   
Sbjct: 1   MSRRSVNPSRRVADGGLPSVGGLLHPKSRSPPVLTIALVVLGVIILIAYFNSGSGVTVTS 60

Query: 312 IKDVSKLEGGASCTSEVLHALPILKKAYGDSMRKVLHVGPDSCLLVPSLLEE-DTEVWGI 488
            + VS+ EG  SCT EV+ ALP LKKAYG+ + KVLHVGPDSC +V +LL+E   E WG+
Sbjct: 61  REAVSRSEG--SCTPEVMQALPYLKKAYGNELHKVLHVGPDSCTVVSNLLKEGKVEAWGV 118

Query: 489 EPYELDDVSAKC 524
           EPY+L+D  + C
Sbjct: 119 EPYDLEDTDSSC 130

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 445,403,591
Number of Sequences: 1393205
Number of extensions: 9290385
Number of successful extensions: 24053
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 23224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23999
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 GNf092g09 BP074195 1 526
2 MPD054b10_f AV773609 2 259




Lotus japonicus
Kazusa DNA Research Institute