KMC003979A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC003979A_C01 KMC003979A_c01
ctctctctCTCAGTCACAGCTCAGCTCAGAGTGAGAACACTTCACAGATCTGGGGCGGTG
ACTCAAGAGATCTCCACCTTCCTTCATTTCATTTCAGTATCAATCAGGTCCATCGGCTCA
TTGCTATTATCATGTCAAGGAGGCCAGTAAATCCTTCACGCCGGTTAGCTGATGGTGGAA
GTATATCATTTGTGTCCTCTATCAAGGCTAAATCTCAGAACTCTCCTCTACTATCTATTG
GGCTTGTGATAGTGGGTGCAATCCTCCTCATTGGTTTTATTTATAGCAGCTCAGGTGGAT
CTAGTGGTGATATTAAGGATGTAAGCAAACTTGAAGGTGGTGCATCATGCACTTCAGAAG
TCCTACATGCATTGCCCATTTTGAAGAAAGCATATGGAGACAGCATGCGAAAGGTTTTGC
ATGTTGGCCCAGACTCTTGTTTGCTGGTACCGAGTTTGTTAGAAGAGGATACTGAGGTTT
GGGGAATAGAACCATATGAATTAGATGATGTAAGTGCAAAGTGTAA
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003979A_C01 KMC003979A_c01
(526 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566924.1| expressed protein; protein id: At3g49720.1, sup... 154 5e-37
dbj|BAB09049.1| emb|CAB66910.1~gene_id:K22J17.2~similar to unkno... 147 7e-35
ref|NP_569020.1| putative protein; protein id: At5g65810.1, supp... 147 7e-35
gb|AAM65141.1| unknown [Arabidopsis thaliana] 147 7e-35
dbj|BAB16471.1| P0019D06.30 [Oryza sativa (japonica cultivar-gro... 135 2e-31
>ref|NP_566924.1| expressed protein; protein id: At3g49720.1, supported by cDNA:
35598. [Arabidopsis thaliana] gi|11285664|pir||T46038
hypothetical protein T16K5.70 - Arabidopsis thaliana
gi|6723417|emb|CAB66910.1| hypothetical protein
[Arabidopsis thaliana] gi|21593048|gb|AAM64997.1|
unknown [Arabidopsis thaliana]
Length = 261
Score = 154 bits (390), Expect = 5e-37
Identities = 77/132 (58%), Positives = 100/132 (75%), Gaps = 1/132 (0%)
Frame = +3
Query: 132 MSRRPVNPSRRLADGGSISFVSSIKAKSQNSPLLSIGLVIVGAILLIGFIYSSSGGSSGD 311
M+RR V +RR+ DGGS F ++ +KS++SPLLSI LV+VGA LLIG+ YS G
Sbjct: 1 MARRQVGSTRRVGDGGSFPFAGALHSKSRSSPLLSICLVLVGACLLIGYAYSGPGIFKS- 59
Query: 312 IKDVSKLEGGASCTSEVLHALPILKKAYGDSMRKVLHVGPDSCLLVPSLL-EEDTEVWGI 488
IK+VSK+ G SCT+EV A+P+LKKAYGD MRKVLHVGPD+C +V SLL EE+TE WG+
Sbjct: 60 IKEVSKVTGDYSCTAEVQRAIPVLKKAYGDGMRKVLHVGPDTCSVVSSLLKEEETEAWGV 119
Query: 489 EPYELDDVSAKC 524
EPY+++D + C
Sbjct: 120 EPYDIEDADSHC 131
>dbj|BAB09049.1| emb|CAB66910.1~gene_id:K22J17.2~similar to unknown protein
[Arabidopsis thaliana]
Length = 219
Score = 147 bits (371), Expect = 7e-35
Identities = 76/132 (57%), Positives = 99/132 (74%), Gaps = 1/132 (0%)
Frame = +3
Query: 132 MSRRPVNPSRRLADGGSISFVSSIKAKSQNSPLLSIGLVIVGAILLIGFIYSSSGGSSGD 311
MSRR V RR+ D GS FV ++ +KS++SPLLS+ LV+VGA LLIG+ YS G
Sbjct: 1 MSRRQV---RRVGDSGSFPFVGALHSKSRSSPLLSVCLVLVGACLLIGYAYSGPGMFKS- 56
Query: 312 IKDVSKLEGGASCTSEVLHALPILKKAYGDSMRKVLHVGPDSCLLVPSLL-EEDTEVWGI 488
I++VSK+ G SCT+EV A+PILK AYGDSMRKVLHVGP++C +V SLL EE+TE WG+
Sbjct: 57 IREVSKITGDYSCTAEVQRAIPILKSAYGDSMRKVLHVGPETCSVVSSLLNEEETEAWGV 116
Query: 489 EPYELDDVSAKC 524
EPY+++D + C
Sbjct: 117 EPYDVEDADSNC 128
>ref|NP_569020.1| putative protein; protein id: At5g65810.1, supported by cDNA:
36946. [Arabidopsis thaliana]
Length = 258
Score = 147 bits (371), Expect = 7e-35
Identities = 76/132 (57%), Positives = 99/132 (74%), Gaps = 1/132 (0%)
Frame = +3
Query: 132 MSRRPVNPSRRLADGGSISFVSSIKAKSQNSPLLSIGLVIVGAILLIGFIYSSSGGSSGD 311
MSRR V RR+ D GS FV ++ +KS++SPLLS+ LV+VGA LLIG+ YS G
Sbjct: 1 MSRRQV---RRVGDSGSFPFVGALHSKSRSSPLLSVCLVLVGACLLIGYAYSGPGMFKS- 56
Query: 312 IKDVSKLEGGASCTSEVLHALPILKKAYGDSMRKVLHVGPDSCLLVPSLL-EEDTEVWGI 488
I++VSK+ G SCT+EV A+PILK AYGDSMRKVLHVGP++C +V SLL EE+TE WG+
Sbjct: 57 IREVSKITGDYSCTAEVQRAIPILKSAYGDSMRKVLHVGPETCSVVSSLLNEEETEAWGV 116
Query: 489 EPYELDDVSAKC 524
EPY+++D + C
Sbjct: 117 EPYDVEDADSNC 128
>gb|AAM65141.1| unknown [Arabidopsis thaliana]
Length = 258
Score = 147 bits (371), Expect = 7e-35
Identities = 76/132 (57%), Positives = 99/132 (74%), Gaps = 1/132 (0%)
Frame = +3
Query: 132 MSRRPVNPSRRLADGGSISFVSSIKAKSQNSPLLSIGLVIVGAILLIGFIYSSSGGSSGD 311
MSRR V RR+ D GS FV ++ +KS++SPLLS+ LV+VGA LLIG+ YS G
Sbjct: 1 MSRRQV---RRVGDSGSFPFVGALHSKSRSSPLLSVCLVLVGACLLIGYAYSGPGMFKS- 56
Query: 312 IKDVSKLEGGASCTSEVLHALPILKKAYGDSMRKVLHVGPDSCLLVPSLL-EEDTEVWGI 488
I++VSK+ G SCT+EV A+PILK AYGDSMRKVLHVGP++C +V SLL EE+TE WG+
Sbjct: 57 IREVSKITGDYSCTAEVQRAIPILKSAYGDSMRKVLHVGPETCSVVSSLLNEEETEAWGV 116
Query: 489 EPYELDDVSAKC 524
EPY+++D + C
Sbjct: 117 EPYDVEDADSNC 128
>dbj|BAB16471.1| P0019D06.30 [Oryza sativa (japonica cultivar-group)]
gi|13486897|dbj|BAB40126.1| P0024G09.18 [Oryza sativa
(japonica cultivar-group)]
Length = 258
Score = 135 bits (341), Expect = 2e-31
Identities = 70/132 (53%), Positives = 93/132 (70%), Gaps = 1/132 (0%)
Frame = +3
Query: 132 MSRRPVNPSRRLADGGSISFVSSIKAKSQNSPLLSIGLVIVGAILLIGFIYSSSGGSSGD 311
MSRR VNPSRR+ADGG S + KS++ P+L+I LV++G I+LI + S SG +
Sbjct: 1 MSRRSVNPSRRVADGGLPSVGGLLHPKSRSPPVLTIALVVLGVIILIAYFNSGSGVTVTS 60
Query: 312 IKDVSKLEGGASCTSEVLHALPILKKAYGDSMRKVLHVGPDSCLLVPSLLEE-DTEVWGI 488
+ VS+ EG SCT EV+ ALP LKKAYG+ + KVLHVGPDSC +V +LL+E E WG+
Sbjct: 61 REAVSRSEG--SCTPEVMQALPYLKKAYGNELHKVLHVGPDSCTVVSNLLKEGKVEAWGV 118
Query: 489 EPYELDDVSAKC 524
EPY+L+D + C
Sbjct: 119 EPYDLEDTDSSC 130
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 445,403,591
Number of Sequences: 1393205
Number of extensions: 9290385
Number of successful extensions: 24053
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 23224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23999
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
GNf092g09 |
BP074195 |
1 |
526 |
2 |
MPD054b10_f |
AV773609 |
2 |
259 |
|
Lotus japonicus
Kazusa DNA Research Institute