Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003978A_C01 KMC003978A_c01
(447 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567941.1| putative protein; protein id: At4g33910.1, supp... 137 3e-32
gb|AAK63935.1|AC084282_16 putative dioxygenase [Oryza sativa (ja... 134 2e-31
pir||T05219 hypothetical protein F17I5.100 - Arabidopsis thalian... 117 2e-26
ref|NP_179891.1| CHP-rich zinc finger protein, putative; protein... 59 1e-08
gb|AAL58274.1|AC068923_16 putative prolyl 4-hydroxylase, alpha s... 54 6e-07
>ref|NP_567941.1| putative protein; protein id: At4g33910.1, supported by cDNA:
2306., supported by cDNA: gi_17381225, supported by
cDNA: gi_20465826 [Arabidopsis thaliana]
gi|17381226|gb|AAL36425.1| unknown protein [Arabidopsis
thaliana] gi|20465827|gb|AAM20018.1| unknown protein
[Arabidopsis thaliana] gi|21592377|gb|AAM64328.1|
putative dioxygenase [Arabidopsis thaliana]
Length = 288
Score = 137 bits (345), Expect = 3e-32
Identities = 75/148 (50%), Positives = 94/148 (62%)
Frame = +1
Query: 1 WRTNKIAFPSVFLLCIFFFLAGFFGSTLFFQYHSQEDEHGLRQIQRPRTTRLLENLTEKE 180
+R K+ +V + C FL GF+GSTL Q + +PR R+L+ + E
Sbjct: 8 YRRKKLGLATVIVFCSLCFLFGFYGSTLLSQNVPRV---------KPRL-RMLDMVENGE 57
Query: 181 TESHLLPAGETGDNFITTIPFQVLSWNPHALYFPNFATAEQCESIIETAKEGLKPSTLVL 360
E+ +P G TG+ I +IPFQVLSW P A+YFPNFATAEQC++IIE AK LKPS L L
Sbjct: 58 EEASSMPHGVTGEESIGSIPFQVLSWRPRAIYFPNFATAEQCQAIIERAKVNLKPSALAL 117
Query: 361 RVGETDESTTGIRTSSGVFISAFEDKTG 444
R GET E+T G RTSSG FISA E+ TG
Sbjct: 118 RKGETAENTKGTRTSSGTFISASEESTG 145
>gb|AAK63935.1|AC084282_16 putative dioxygenase [Oryza sativa (japonica cultivar-group)]
gi|17027263|gb|AAL34117.1|AC090713_4 putative
hydroxylase subunit [Oryza sativa (japonica
cultivar-group)]
Length = 310
Score = 134 bits (338), Expect = 2e-31
Identities = 74/145 (51%), Positives = 94/145 (64%), Gaps = 1/145 (0%)
Frame = +1
Query: 13 KIAFPSVFLLCIFFFLAGFFGSTLFFQYHSQEDEHGLRQIQRP-RTTRLLENLTEKETES 189
++ P V L C FFLAGFFGS LF Q D G ++ P R RL+E
Sbjct: 34 RLRLPVVLLSCSLFFLAGFFGSILFTQ-----DPQGEEELDTPMRRERLMEAAWPG---- 84
Query: 190 HLLPAGETGDNFITTIPFQVLSWNPHALYFPNFATAEQCESIIETAKEGLKPSTLVLRVG 369
+ GE+G+ + IP+Q+LSW P ALYFP FAT++QCE+I++TAK+ L PSTL LR G
Sbjct: 85 --MAYGESGEPEPSLIPYQILSWQPRALYFPQFATSQQCENIVKTAKQRLMPSTLALRKG 142
Query: 370 ETDESTTGIRTSSGVFISAFEDKTG 444
ET+EST GIRTSSG F+S+ ED TG
Sbjct: 143 ETEESTKGIRTSSGTFLSSDEDPTG 167
>pir||T05219 hypothetical protein F17I5.100 - Arabidopsis thaliana
gi|3297815|emb|CAA19873.1| putative protein [Arabidopsis
thaliana] gi|7270340|emb|CAB80108.1| putative protein
[Arabidopsis thaliana]
Length = 257
Score = 117 bits (294), Expect = 2e-26
Identities = 58/89 (65%), Positives = 67/89 (75%)
Frame = +1
Query: 178 ETESHLLPAGETGDNFITTIPFQVLSWNPHALYFPNFATAEQCESIIETAKEGLKPSTLV 357
E E+ +P G TG+ I +IPFQVLSW P A+YFPNFATAEQC++IIE AK LKPS L
Sbjct: 6 EEEASSMPHGVTGEESIGSIPFQVLSWRPRAIYFPNFATAEQCQAIIERAKVNLKPSALA 65
Query: 358 LRVGETDESTTGIRTSSGVFISAFEDKTG 444
LR GET E+T G RTSSG FISA E+ TG
Sbjct: 66 LRKGETAENTKGTRTSSGTFISASEESTG 94
>ref|NP_179891.1| CHP-rich zinc finger protein, putative; protein id: At2g23100.1
[Arabidopsis thaliana] gi|25412156|pir||E84620
hypothetical protein At2g23100 [imported] - Arabidopsis
thaliana gi|3169183|gb|AAC17826.1| hypothetical protein
[Arabidopsis thaliana]
Length = 1036
Score = 59.3 bits (142), Expect = 1e-08
Identities = 26/40 (65%), Positives = 30/40 (75%)
Frame = +1
Query: 244 QVLSWNPHALYFPNFATAEQCESIIETAKEGLKPSTLVLR 363
Q LSWNP Y PNFAT +QCE++I+ AK LKPSTL LR
Sbjct: 798 QGLSWNPRVFYLPNFATKQQCEAVIDMAKPKLKPSTLALR 837
>gb|AAL58274.1|AC068923_16 putative prolyl 4-hydroxylase, alpha subunit [Oryza sativa
(japonica cultivar-group)]
Length = 343
Score = 53.5 bits (127), Expect = 6e-07
Identities = 30/70 (42%), Positives = 41/70 (57%), Gaps = 5/70 (7%)
Frame = +1
Query: 244 QVLSWNPHALYFPNFATAEQCESIIETAKEGLKPSTLVLRVGETDESTTG-----IRTSS 408
+VLSW P A + NF + E+CE +I AK +K ST+V D ST G +RTSS
Sbjct: 111 EVLSWEPRAFLYHNFLSKEECEYLISLAKPHMKKSTVV------DASTGGSKDSRVRTSS 164
Query: 409 GVFISAFEDK 438
G+F+ +DK
Sbjct: 165 GMFLGRGQDK 174
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 364,394,933
Number of Sequences: 1393205
Number of extensions: 7410277
Number of successful extensions: 41674
Number of sequences better than 10.0: 204
Number of HSP's better than 10.0 without gapping: 33327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40169
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 6622363848
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
