Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003971A_C01 KMC003971A_c01
(489 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL48901.1| RE30730p [Drosophila melanogaster] 32 5.0
gb|AAL49228.1| RE65532p [Drosophila melanogaster] 32 5.0
ref|NP_612004.2| CG7047-PB [Drosophila melanogaster] gi|24654534... 32 5.0
>gb|AAL48901.1| RE30730p [Drosophila melanogaster]
Length = 271
Score = 31.6 bits (70), Expect = 5.0
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -3
Query: 337 IPSLFLGPFTWISMTCLKVFRTNNRIHIGAM*RFYSSHLVFLYI--IYLEIEEEVNIGP 167
+PS FLG + WI C R NN I + +H VF+ + I L +E+ + P
Sbjct: 32 LPSTFLGRYGWIQFYCKAALRENNGI-------IHKNHQVFIVMNPIDLNLEKPILAQP 83
>gb|AAL49228.1| RE65532p [Drosophila melanogaster]
Length = 342
Score = 31.6 bits (70), Expect = 5.0
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -3
Query: 337 IPSLFLGPFTWISMTCLKVFRTNNRIHIGAM*RFYSSHLVFLYI--IYLEIEEEVNIGP 167
+PS FLG + WI C R NN I + +H VF+ + I L +E+ + P
Sbjct: 103 LPSTFLGRYGWIQFYCKAALRENNGI-------IHKNHQVFIVMNPIDLNLEKPILAQP 154
>ref|NP_612004.2| CG7047-PB [Drosophila melanogaster] gi|24654534|ref|NP_728479.1|
CG7047-PC [Drosophila melanogaster]
gi|7291921|gb|AAF47338.1| CG7047-PB [Drosophila
melanogaster] gi|7291922|gb|AAF47339.1| CG7047-PC
[Drosophila melanogaster]
Length = 342
Score = 31.6 bits (70), Expect = 5.0
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -3
Query: 337 IPSLFLGPFTWISMTCLKVFRTNNRIHIGAM*RFYSSHLVFLYI--IYLEIEEEVNIGP 167
+PS FLG + WI C R NN I + +H VF+ + I L +E+ + P
Sbjct: 103 LPSTFLGRYGWIQFYCKAALRENNGI-------IHKNHQVFIVMNPIDLNLEKPILAQP 154
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 406,528,199
Number of Sequences: 1393205
Number of extensions: 8121862
Number of successful extensions: 15575
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15575
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
