Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003968A_C01 KMC003968A_c01
(537 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176981.1| unknown protein; protein id: At1g68140.1, suppo... 44 0.001
gb|AAM44363.1| hypothetical protein [Dictyostelium discoideum] g... 37 0.12
emb|CAD59142.1| Hypothetical protein C46C2.1b [Caenorhabditis el... 35 0.44
emb|CAA92591.2| Hypothetical protein C46C2.1a [Caenorhabditis el... 35 0.44
sp|O02491|HMEN_ANOGA Segmentation polarity homeobox protein engr... 35 0.44
>ref|NP_176981.1| unknown protein; protein id: At1g68140.1, supported by cDNA:
gi_17064999 [Arabidopsis thaliana]
gi|12324063|gb|AAG51991.1|AC012563_1 unknown protein;
3976-4980 [Arabidopsis thaliana]
gi|17065000|gb|AAL32654.1| Unknown protein [Arabidopsis
thaliana] gi|20260054|gb|AAM13374.1| unknown protein
[Arabidopsis thaliana]
Length = 334
Score = 43.9 bits (102), Expect = 0.001
Identities = 23/47 (48%), Positives = 32/47 (67%)
Frame = -3
Query: 442 DEDDGYDEGNDDGVSLVSRLRHHGGGRVLLGRSGRRRRRREVHERMG 302
+E++ +E + + SL SR+R G RVLLGRSGRRRR RE ++ G
Sbjct: 286 EEEEEEEERHSNSNSLASRMRRQG--RVLLGRSGRRRRDREANQNTG 330
>gb|AAM44363.1| hypothetical protein [Dictyostelium discoideum]
gi|28828387|gb|AAM09303.2| similar to Plasmodium
lophurae. Histidine-rich glycoprotein precursor
[Dictyostelium discoideum]
Length = 233
Score = 37.4 bits (85), Expect = 0.12
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +1
Query: 370 HHGDGDD*PEKHHHHCPHHTRHLHLRHPARLPHP 471
HH HHHH HH H H HP PHP
Sbjct: 128 HHHHHHHHHHHHHHHHHHHHHHHHHHHPHHHPHP 161
Score = 34.7 bits (78), Expect = 0.75
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +1
Query: 370 HHGDGDD*PEKHHHHCPHHTRHLHLRHPARLPH 468
HH HHHH HH H H HP PH
Sbjct: 73 HHHHHHHHHHHHHHHHHHHHHHHHPHHPHHHPH 105
Score = 33.5 bits (75), Expect = 1.7
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +1
Query: 370 HHGDGDD*PEKHHHHCPHHTRHLHLRHPARLPHPDL 477
HH HHHH HH H HP PHP L
Sbjct: 136 HHHHHHHHHHHHHHHHHHHPHHHPHPHPHPHPHPHL 171
Score = 32.7 bits (73), Expect = 2.8
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +1
Query: 370 HHGDGDD*PEKHHHHCPHHTRHLHLRHPARLPHP 471
HH HHHH HH H HP PHP
Sbjct: 132 HHHHHHHHHHHHHHHHHHHHHHHPHHHPHPHPHP 165
Score = 32.3 bits (72), Expect = 3.7
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Frame = +1
Query: 370 HHGDGDD*PEKHHHHCPHHTRHLHLR-------HPARLPHP 471
HH HHHH PHH H H HP PHP
Sbjct: 139 HHHHHHHHHHHHHHHHPHHHPHPHPHPHPHPHLHPNPHPHP 179
Score = 32.0 bits (71), Expect = 4.8
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +1
Query: 370 HHGDGDD*PEKHHHHCPHHTRHLHLRHPARLPHP 471
HH HHHH HH H HP PHP
Sbjct: 134 HHHHHHHHHHHHHHHHHHHHHPHHHPHPHPHPHP 167
Score = 31.6 bits (70), Expect = 6.3
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +1
Query: 370 HHGDGDD*PEKHHHHCPHHTRHLHLRH 450
HH P HHHH HH H H H
Sbjct: 102 HHPHHHHHPHHHHHHHHHHHHHHHHHH 128
Score = 31.6 bits (70), Expect = 6.3
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +1
Query: 370 HHGDGDD*PEKHHHHCPHHTRHLHLRH 450
HH HHHH PHH H H H
Sbjct: 94 HHHPHHPHHHPHHHHHPHHHHHHHHHH 120
>emb|CAD59142.1| Hypothetical protein C46C2.1b [Caenorhabditis elegans]
Length = 1678
Score = 35.4 bits (80), Expect = 0.44
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 334 ASSQTDPIEPCLHHGDGDD*PEKHHHHCPHHTRHLHLRH 450
+S+++ + H D P +HHHH PH H HL++
Sbjct: 1592 SSTKSSNVSVSSRHRDNQSAPPRHHHHQPHPPHHPHLQN 1630
>emb|CAA92591.2| Hypothetical protein C46C2.1a [Caenorhabditis elegans]
Length = 1839
Score = 35.4 bits (80), Expect = 0.44
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 334 ASSQTDPIEPCLHHGDGDD*PEKHHHHCPHHTRHLHLRH 450
+S+++ + H D P +HHHH PH H HL++
Sbjct: 1753 SSTKSSNVSVSSRHRDNQSAPPRHHHHQPHPPHHPHLQN 1791
>sp|O02491|HMEN_ANOGA Segmentation polarity homeobox protein engrailed
gi|2076747|gb|AAB54088.1| engrailed
gi|2148918|gb|AAB58461.1| engrailed [Anopheles gambiae]
Length = 596
Score = 35.4 bits (80), Expect = 0.44
Identities = 21/63 (33%), Positives = 26/63 (40%)
Frame = +1
Query: 283 SLIVNCLPSFHVLLYVYASSQTDPIEPCLHHGDGDD*PEKHHHHCPHHTRHLHLRHPARL 462
S++V P H+ S P +P HH HHH PHH H H HP +
Sbjct: 66 SVVVPISP-LHIKQEPLGSDGPMPAQPPHHH------QHPHHHQLPHHPHHQH--HPQQQ 116
Query: 463 PHP 471
P P
Sbjct: 117 PSP 119
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 500,769,332
Number of Sequences: 1393205
Number of extensions: 11953527
Number of successful extensions: 58474
Number of sequences better than 10.0: 167
Number of HSP's better than 10.0 without gapping: 45064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54801
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
