Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003967A_C01 KMC003967A_c01
(407 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM12737.1|AF489615_1 NADH dehydrogenase subunit 4 [Aneides a... 34 0.49
gb|AAL87861.1| NADH dehydrogenase subunit 4 [Pseudoeurycea cepha... 33 0.84
emb|CAA66272.1| P450L1A1 [Kluyveromyces marxianus] 33 1.1
gb|AAK21144.1| NADH dehydrogenase subunit 4 [Plethodon dunni] 32 2.5
gb|AAM12736.1| NADH dehydrogenase subunit 4 [Aneides aeneus] 31 3.2
>gb|AAM12737.1|AF489615_1 NADH dehydrogenase subunit 4 [Aneides aeneus]
Length = 245
Score = 33.9 bits (76), Expect = 0.49
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 170 GFSVKRVTTLGTKLAQVGVPIESVTLWKITLFSINCSTNTDP 45
G+ + R+T + T L ++ P + LW I + S+ C TDP
Sbjct: 28 GYGIIRITLMFTPLIELSYPFIILALWGILMTSLICMRQTDP 69
>gb|AAL87861.1| NADH dehydrogenase subunit 4 [Pseudoeurycea cephalica]
Length = 236
Score = 33.1 bits (74), Expect = 0.84
Identities = 13/41 (31%), Positives = 24/41 (57%)
Frame = -1
Query: 170 GFSVKRVTTLGTKLAQVGVPIESVTLWKITLFSINCSTNTD 48
G+ + R+TT+ T L ++ P ++LW I + + C+ TD
Sbjct: 5 GYGIIRITTMFTPLIELSYPFIILSLWGILMTGLICTRQTD 45
>emb|CAA66272.1| P450L1A1 [Kluyveromyces marxianus]
Length = 112
Score = 32.7 bits (73), Expect = 1.1
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 154 LLTLKPELTS*TKDYLPQKHKLHTPFPSLLDHFPIPNTSY 273
LL P L K+ L H LH+ F +++ P+PNTSY
Sbjct: 60 LLQEMPFLNQTIKETLRLHHPLHSLFRKVMNDMPVPNTSY 99
>gb|AAK21144.1| NADH dehydrogenase subunit 4 [Plethodon dunni]
Length = 228
Score = 31.6 bits (70), Expect = 2.5
Identities = 12/41 (29%), Positives = 23/41 (55%)
Frame = -1
Query: 170 GFSVKRVTTLGTKLAQVGVPIESVTLWKITLFSINCSTNTD 48
G+ + R+T++ T L ++ P + LW I + + C+ TD
Sbjct: 10 GYGIIRITSMFTPLVELSYPFIILALWGILMTGLICTRQTD 50
>gb|AAM12736.1| NADH dehydrogenase subunit 4 [Aneides aeneus]
Length = 243
Score = 31.2 bits (69), Expect = 3.2
Identities = 13/41 (31%), Positives = 22/41 (52%)
Frame = -1
Query: 170 GFSVKRVTTLGTKLAQVGVPIESVTLWKITLFSINCSTNTD 48
G+ + R+T + T L ++ P + LW I + S+ C TD
Sbjct: 26 GYGIIRITLMFTPLIELSYPFIILALWGILMTSLICMRQTD 66
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 378,339,560
Number of Sequences: 1393205
Number of extensions: 8184518
Number of successful extensions: 16935
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 16170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16919
length of database: 448,689,247
effective HSP length: 111
effective length of database: 294,043,492
effective search space used: 7057043808
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
