Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003966A_C02 KMC003966A_c02
(692 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC32137.1| hypothetical protein [Picea mariana] 175 5e-43
ref|NP_177978.1| dTDP-glucose 4,6-dehydratase, putative; protein... 175 5e-43
ref|NP_188097.1| dTDP-glucose 4,6-dehydratase, putative; protein... 175 5e-43
gb|AAK62450.1|AF387005_1 Unknown protein [Arabidopsis thaliana] 175 6e-43
ref|NP_564806.1| expressed protein; protein id: At1g63000.1, sup... 175 6e-43
>gb|AAC32137.1| hypothetical protein [Picea mariana]
Length = 271
Score = 175 bits (444), Expect = 5e-43
Identities = 84/96 (87%), Positives = 89/96 (92%)
Frame = -1
Query: 692 DELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYRDYIDPNFKWVNFNLEEQAKVIVA 513
DELLPISIEMAKRNL GIWNFTNPGVVSHNEILEMYRDYIDP++ W NF LEEQAKVIVA
Sbjct: 172 DELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRDYIDPSYTWRNFTLEEQAKVIVA 231
Query: 512 PRSNNELDASKLNTEFPELLPIKESLIKYVFEPNKK 405
RSNNE+DASKL EFPELLPIKESL+KYVFEPN+K
Sbjct: 232 ARSNNEMDASKLKKEFPELLPIKESLVKYVFEPNQK 267
>ref|NP_177978.1| dTDP-glucose 4,6-dehydratase, putative; protein id: At1g78570.1,
supported by cDNA: gi_14596090, supported by cDNA:
gi_20148284 [Arabidopsis thaliana]
gi|25406555|pir||C96814 hypothetical protein T30F21.10
[imported] - Arabidopsis thaliana
gi|4836876|gb|AAD30579.1|AC007260_10 Similar to
dTDP-D-glucose 4,6-dehydratase [Arabidopsis thaliana]
gi|14596091|gb|AAK68773.1| Similar to dTDP-D-glucose
4,6-dehydratase [Arabidopsis thaliana]
gi|20148285|gb|AAM10033.1| similar to dTDP-D-glucose
4,6-dehydratase [Arabidopsis thaliana]
Length = 669
Score = 175 bits (444), Expect = 5e-43
Identities = 84/96 (87%), Positives = 88/96 (91%)
Frame = -1
Query: 692 DELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYRDYIDPNFKWVNFNLEEQAKVIVA 513
DELLPISIEMAKRNL+GIWNFTNPGVVSHNEILEMYRDYI+P FKW NF LEEQAKVIVA
Sbjct: 573 DELLPISIEMAKRNLKGIWNFTNPGVVSHNEILEMYRDYINPEFKWANFTLEEQAKVIVA 632
Query: 512 PRSNNELDASKLNTEFPELLPIKESLIKYVFEPNKK 405
PRSNNE+DASKL EFPELL IKESLIKY + PNKK
Sbjct: 633 PRSNNEMDASKLKKEFPELLSIKESLIKYAYGPNKK 668
>ref|NP_188097.1| dTDP-glucose 4,6-dehydratase, putative; protein id: At3g14790.1,
supported by cDNA: gi_19310442 [Arabidopsis thaliana]
gi|11994590|dbj|BAB02645.1| gene_id:T21E2.5~similar to
dTDP-D-glucose 4,6-dehydratase [Arabidopsis thaliana]
gi|19310443|gb|AAL84958.1| AT3g14790/T21E2_4
[Arabidopsis thaliana] gi|22655464|gb|AAM98324.1|
At3g14790/T21E2_4 [Arabidopsis thaliana]
Length = 664
Score = 175 bits (444), Expect = 5e-43
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = -1
Query: 692 DELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYRDYIDPNFKWVNFNLEEQAKVIVA 513
DELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMY+ YI+P+FKW NFNLEEQAKVIVA
Sbjct: 568 DELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKSYIEPDFKWSNFNLEEQAKVIVA 627
Query: 512 PRSNNELDASKLNTEFPELLPIKESLIKYVFEPNKK 405
PRSNNE+D +KL+ EFPE+L IK+SLIKYVFEPNK+
Sbjct: 628 PRSNNEMDGAKLSKEFPEMLSIKDSLIKYVFEPNKR 663
>gb|AAK62450.1|AF387005_1 Unknown protein [Arabidopsis thaliana]
Length = 301
Score = 175 bits (443), Expect = 6e-43
Identities = 85/96 (88%), Positives = 90/96 (93%)
Frame = -1
Query: 692 DELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYRDYIDPNFKWVNFNLEEQAKVIVA 513
DELLPISIEMAKRNL GI+NFTNPGVVSHNEILEMYRDYIDP+F W NF LEEQAKVIVA
Sbjct: 201 DELLPISIEMAKRNLTGIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLEEQAKVIVA 260
Query: 512 PRSNNELDASKLNTEFPELLPIKESLIKYVFEPNKK 405
PRSNNELDA+KL TEFPEL+ IKESLIK+VFEPNKK
Sbjct: 261 PRSNNELDATKLKTEFPELMSIKESLIKFVFEPNKK 296
>ref|NP_564806.1| expressed protein; protein id: At1g63000.1, supported by cDNA:
41505., supported by cDNA: gi_12083297, supported by
cDNA: gi_14423535 [Arabidopsis thaliana]
gi|25404387|pir||B96655 hypothetical protein F16P17.17
[imported] - Arabidopsis thaliana
gi|8493590|gb|AAF75813.1|AC011000_16 Contains weak
similarity to 5-epimerase from Saccharopolyspora
erythraea gb|L37354. ESTs gb|T41773, gb|R29767,
gb|T88368, gb|F13963 come from this gene. [Arabidopsis
thaliana] gi|12083298|gb|AAG48808.1|AF332445_1 unknown
protein [Arabidopsis thaliana]
Length = 301
Score = 175 bits (443), Expect = 6e-43
Identities = 85/96 (88%), Positives = 90/96 (93%)
Frame = -1
Query: 692 DELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYRDYIDPNFKWVNFNLEEQAKVIVA 513
DELLPISIEMAKRNL GI+NFTNPGVVSHNEILEMYRDYIDP+F W NF LEEQAKVIVA
Sbjct: 201 DELLPISIEMAKRNLTGIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLEEQAKVIVA 260
Query: 512 PRSNNELDASKLNTEFPELLPIKESLIKYVFEPNKK 405
PRSNNELDA+KL TEFPEL+ IKESLIK+VFEPNKK
Sbjct: 261 PRSNNELDATKLKTEFPELMSIKESLIKFVFEPNKK 296
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 568,285,134
Number of Sequences: 1393205
Number of extensions: 11926211
Number of successful extensions: 29014
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 27520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28992
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31401661572
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
