Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003965A_C01 KMC003965A_c01
(514 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_619004.1| predicted protein [Methanosarcina acetivorans s... 32 5.6
ref|NP_509365.1| Putative nuclear protein, with a coiled coil-4 ... 31 9.6
gb|AAN72013.1| putative protein [Arabidopsis thaliana] 31 9.6
ref|NP_568776.1| myb family transcription factor; protein id: At... 31 9.6
>ref|NP_619004.1| predicted protein [Methanosarcina acetivorans str. C2A]
gi|19918240|gb|AAM07484.1| predicted protein
[Methanosarcina acetivorans str. C2A]
Length = 135
Score = 31.6 bits (70), Expect = 5.6
Identities = 13/41 (31%), Positives = 21/41 (50%), Gaps = 2/41 (4%)
Frame = +2
Query: 56 FYWYIYN--TNLLFYPNSRKQLHSMINKSTQQSVQYSLHQV 172
F+W+ +N T FYPN K +HS+ N + + Q+
Sbjct: 77 FFWFFFNLKTTTKFYPNLSKSIHSLKNVDSFTQASTKIFQI 117
>ref|NP_509365.1| Putative nuclear protein, with a coiled coil-4 domain, nematode
specific [Caenorhabditis elegans]
gi|25375381|pir||B89583 protein K07E3.2 [imported] -
Caenorhabditis elegans gi|1118059|gb|AAC69099.1|
Hypothetical protein K07E3.2 [Caenorhabditis elegans]
Length = 837
Score = 30.8 bits (68), Expect = 9.6
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 308 NSIHKYVNELCTHESIYNCIFSFNLKPCFRTNY-WQQ 415
N + KY+ + C ++S YN I+ + RT Y WQ+
Sbjct: 182 NRVAKYIAQFCFNQSDYNTIYQWRAMVASRTEYDWQR 218
>gb|AAN72013.1| putative protein [Arabidopsis thaliana]
Length = 331
Score = 30.8 bits (68), Expect = 9.6
Identities = 12/17 (70%), Positives = 15/17 (87%)
Frame = -3
Query: 512 EFEDHKRLISSYDADSE 462
+FEDH+RL+SSYD SE
Sbjct: 294 DFEDHRRLLSSYDIGSE 310
>ref|NP_568776.1| myb family transcription factor; protein id: At5g52660.1, supported
by cDNA: 37702. [Arabidopsis thaliana]
gi|21593278|gb|AAM65227.1| contains similarity to
MYB-related DNA-binding protein [Arabidopsis thaliana]
Length = 330
Score = 30.8 bits (68), Expect = 9.6
Identities = 12/17 (70%), Positives = 15/17 (87%)
Frame = -3
Query: 512 EFEDHKRLISSYDADSE 462
+FEDH+RL+SSYD SE
Sbjct: 293 DFEDHRRLLSSYDIGSE 309
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 380,807,135
Number of Sequences: 1393205
Number of extensions: 7092381
Number of successful extensions: 16131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16131
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
