Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003963A_C01 KMC003963A_c01
(610 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564495.1| expressed protein; protein id: At1g45688.1, sup... 71 1e-11
ref|NP_199100.1| putative protein; protein id: At5g42860.1 [Arab... 65 5e-10
gb|AAO42869.1| At5g42860 [Arabidopsis thaliana] 65 5e-10
emb|CAB53482.1| CAA30379.1 protein [Oryza sativa] 63 3e-09
ref|NP_181730.1| unknown protein; protein id: At2g41990.1 [Arabi... 56 3e-07
>ref|NP_564495.1| expressed protein; protein id: At1g45688.1, supported by cDNA:
8255., supported by cDNA: gi_20466719 [Arabidopsis
thaliana] gi|25405173|pir||A96511 unknown protein
[imported] - Arabidopsis thaliana
gi|12321012|gb|AAG50630.1|AC083835_15 unknown protein
[Arabidopsis thaliana] gi|20466720|gb|AAM20677.1|
unknown protein [Arabidopsis thaliana]
gi|21595730|gb|AAM66126.1| unknown [Arabidopsis
thaliana] gi|23198230|gb|AAN15642.1| unknown protein
[Arabidopsis thaliana]
Length = 342
Score = 70.9 bits (172), Expect = 1e-11
Identities = 30/53 (56%), Positives = 41/53 (76%)
Frame = -2
Query: 594 PTVPVPLKLSFVIRSRAYVLGKLVKPKYYKRIECSITLDPQKINAIVSLKKSC 436
P PVP+ LSFV+RSRAYVLGKLV+PK+YK+IEC I + + +N + + K+C
Sbjct: 285 PPAPVPMTLSFVVRSRAYVLGKLVQPKFYKKIECDINFEHKNLNKHIVITKNC 337
>ref|NP_199100.1| putative protein; protein id: At5g42860.1 [Arabidopsis thaliana]
gi|9758574|dbj|BAB09187.1|
emb|CAB53482.1~gene_id:MBD2.5~similar to unknown protein
[Arabidopsis thaliana]
Length = 320
Score = 65.5 bits (158), Expect = 5e-10
Identities = 27/53 (50%), Positives = 40/53 (74%)
Frame = -2
Query: 594 PTVPVPLKLSFVIRSRAYVLGKLVKPKYYKRIECSITLDPQKINAIVSLKKSC 436
P PVP++L+F +RSRAYVLGKLV+PK+YKRI C I + +K++ + + +C
Sbjct: 263 PPAPVPMRLNFTVRSRAYVLGKLVQPKFYKRIVCLINFEHKKLSKHIPITNNC 315
>gb|AAO42869.1| At5g42860 [Arabidopsis thaliana]
Length = 320
Score = 65.5 bits (158), Expect = 5e-10
Identities = 27/53 (50%), Positives = 40/53 (74%)
Frame = -2
Query: 594 PTVPVPLKLSFVIRSRAYVLGKLVKPKYYKRIECSITLDPQKINAIVSLKKSC 436
P PVP++L+F +RSRAYVLGKLV+PK+YKRI C I + +K++ + + +C
Sbjct: 263 PPAPVPMRLNFTVRSRAYVLGKLVQPKFYKRIVCLINFEHKKLSKHIPITNNC 315
>emb|CAB53482.1| CAA30379.1 protein [Oryza sativa]
Length = 835
Score = 62.8 bits (151), Expect = 3e-09
Identities = 28/52 (53%), Positives = 37/52 (70%)
Frame = -2
Query: 585 PVPLKLSFVIRSRAYVLGKLVKPKYYKRIECSITLDPQKINAIVSLKKSCKY 430
PVP+ L + SRAYVLG LVKPK+ + IEC + ++P K+N +SL KSC Y
Sbjct: 783 PVPMILRTTVHSRAYVLGALVKPKFTRAIECKVLMNPAKLNKPISLDKSCIY 834
>ref|NP_181730.1| unknown protein; protein id: At2g41990.1 [Arabidopsis thaliana]
gi|25408769|pir||F84848 hypothetical protein At2g41990
[imported] - Arabidopsis thaliana
gi|1871184|gb|AAB63544.1| unknown protein [Arabidopsis
thaliana]
Length = 297
Score = 56.2 bits (134), Expect = 3e-07
Identities = 25/54 (46%), Positives = 37/54 (68%)
Frame = -2
Query: 597 MPTVPVPLKLSFVIRSRAYVLGKLVKPKYYKRIECSITLDPQKINAIVSLKKSC 436
+ T+ +PL L+ V+ S+AY+LG+LV K+Y RI CS TLD + +SL +SC
Sbjct: 242 LDTLSLPLNLTIVLHSKAYILGRLVTSKFYTRIICSFTLDANHLPKSISLLRSC 295
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,513,065
Number of Sequences: 1393205
Number of extensions: 11089065
Number of successful extensions: 23914
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 23217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23891
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
