Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003960A_C01 KMC003960A_c01
(625 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563840.1| expressed protein; protein id: At1g09280.1, sup... 80 3e-20
pir||G86225 hypothetical protein [imported] - Arabidopsis thalia... 80 3e-20
ref|NP_502376.1| Candidate tumor suppressor OVCA2 like (24.7 kD)... 34 1.8
gb|AAD47251.1|AF159053_1 E6 protein [Human papillomavirus type 8] 32 6.7
ref|XP_224604.1| similar to Interleukin-17B receptor precursor (... 32 6.7
>ref|NP_563840.1| expressed protein; protein id: At1g09280.1, supported by cDNA:
gi_15081790 [Arabidopsis thaliana]
gi|15081791|gb|AAK82550.1| At1g09280/T12M4_1
[Arabidopsis thaliana]
Length = 581
Score = 80.1 bits (196), Expect(3) = 3e-20
Identities = 36/54 (66%), Positives = 44/54 (80%)
Frame = -3
Query: 476 KPGKDRQIAHPASKELASLYDDSCSVIVEHDCGHIIPTRSPYIDEIKDFLGRFL 315
+PGKDRQI AS +LA L++D C+ IVEHD GHIIPT+SPYIDEIK FL +F+
Sbjct: 528 QPGKDRQIVTQASSDLAGLFEDGCATIVEHDFGHIIPTKSPYIDEIKAFLYQFI 581
Score = 33.9 bits (76), Expect(3) = 3e-20
Identities = 14/19 (73%), Positives = 17/19 (88%)
Frame = -1
Query: 601 QEKLRGEMDFKFVVLCSGF 545
QE+L GE+DF+F VLCSGF
Sbjct: 485 QEQLVGEIDFRFCVLCSGF 503
Score = 25.8 bits (55), Expect(3) = 3e-20
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2
Query: 510 IKCPCLHIFGNE 475
IKCP LHIFG++
Sbjct: 517 IKCPSLHIFGSQ 528
>pir||G86225 hypothetical protein [imported] - Arabidopsis thaliana
gi|3249095|gb|AAC24078.1| Contains similarity to
dihydrofolate reductase (dfr1) gb|L13703 from
Schizosaccharomyces pombe. ESTs gb|N37567 and gb|T43002
come from this gene. [Arabidopsis thaliana]
Length = 550
Score = 80.1 bits (196), Expect(3) = 3e-20
Identities = 36/54 (66%), Positives = 44/54 (80%)
Frame = -3
Query: 476 KPGKDRQIAHPASKELASLYDDSCSVIVEHDCGHIIPTRSPYIDEIKDFLGRFL 315
+PGKDRQI AS +LA L++D C+ IVEHD GHIIPT+SPYIDEIK FL +F+
Sbjct: 497 QPGKDRQIVTQASSDLAGLFEDGCATIVEHDFGHIIPTKSPYIDEIKAFLYQFI 550
Score = 33.9 bits (76), Expect(3) = 3e-20
Identities = 14/19 (73%), Positives = 17/19 (88%)
Frame = -1
Query: 601 QEKLRGEMDFKFVVLCSGF 545
QE+L GE+DF+F VLCSGF
Sbjct: 454 QEQLVGEIDFRFCVLCSGF 472
Score = 25.8 bits (55), Expect(3) = 3e-20
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2
Query: 510 IKCPCLHIFGNE 475
IKCP LHIFG++
Sbjct: 486 IKCPSLHIFGSQ 497
>ref|NP_502376.1| Candidate tumor suppressor OVCA2 like (24.7 kD) [Caenorhabditis
elegans] gi|7496506|pir||T19468 hypothetical protein
C25G4.2 - Caenorhabditis elegans
gi|3874416|emb|CAA94571.1| Hypothetical protein C25G4.2
[Caenorhabditis elegans]
Length = 221
Score = 33.9 bits (76), Expect = 1.8
Identities = 14/46 (30%), Positives = 29/46 (62%)
Frame = -3
Query: 464 DRQIAHPASKELASLYDDSCSVIVEHDCGHIIPTRSPYIDEIKDFL 327
D +A P S+++A ++D + + HD GH++P+ S + ++I F+
Sbjct: 166 DEIVARPKSEKMADMFDVE-PLRIAHDGGHVVPSMSKHKEKIAGFM 210
>gb|AAD47251.1|AF159053_1 E6 protein [Human papillomavirus type 8]
Length = 120
Score = 32.0 bits (71), Expect = 6.7
Identities = 16/46 (34%), Positives = 24/46 (51%)
Frame = -2
Query: 183 CAIVSLDIASFKCSEHYFQTILGRD*LLEMGALLLSFALSNMNCSS 46
C + A+F+ +E+Y QT+LGRD L G + + NC S
Sbjct: 54 CRCCCVATATFEFNEYYEQTVLGRDIELATGRSIFEIDVRCQNCLS 99
>ref|XP_224604.1| similar to Interleukin-17B receptor precursor (IL-17B receptor)
(IL-17 receptor homolog 1) (IL-17Rh1) (IL17Rh1)
(IL-17ER) [Rattus norvegicus]
Length = 709
Score = 32.0 bits (71), Expect = 6.7
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Frame = +3
Query: 378 TTIMFNYYRTTIII*RSKFLASWVGYLSVFTWFHCRKYE-DKGTL*DQTPSPSLCRAKPE 554
T + NY R+ +I+ K+ + + W +K DK + +PSLC +
Sbjct: 559 TDFLQNYCRSEVIL--EKWQKKKIAEMGPVQWLTTQKQAADKVVFLLPSDAPSLCDSACG 616
Query: 555 HK----TTNLKSISPLSFSWWCGD 614
HK T N + + PL+F+ +C D
Sbjct: 617 HKEGSATENSQDLFPLAFNLFCSD 640
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 514,268,923
Number of Sequences: 1393205
Number of extensions: 10424739
Number of successful extensions: 23043
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 22434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23038
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
