Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003959A_C01 KMC003959A_c01
(522 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200025.1| putative protein; protein id: At5g52120.1, supp... 96 2e-19
gb|AAM92303.1| unknown protein [Oryza sativa (japonica cultivar-... 95 4e-19
ref|NP_176497.1| unknown protein; protein id: At1g63090.1 [Arabi... 89 3e-17
gb|AAO22780.1| unknown protein [Arabidopsis thaliana] 89 3e-17
ref|NP_567108.1| putative protein; protein id: At3g61060.1, supp... 86 3e-16
>ref|NP_200025.1| putative protein; protein id: At5g52120.1, supported by cDNA:
gi_18175687, supported by cDNA: gi_20465820 [Arabidopsis
thaliana] gi|18175688|gb|AAL59911.1| unknown protein
[Arabidopsis thaliana] gi|20465821|gb|AAM20015.1|
unknown protein [Arabidopsis thaliana]
Length = 291
Score = 96.3 bits (238), Expect = 2e-19
Identities = 43/68 (63%), Positives = 53/68 (77%)
Frame = -3
Query: 520 VKFQLTTSDGQHAESHSHLDNPGHWVLYHAGNFVSKNSNDLMNIKFSLSQIDCTHTKGGL 341
V+FQL+TSDGQ A S HLD G WV +HAG+FV +N N + +KFS+ QIDCTHTKGGL
Sbjct: 212 VRFQLSTSDGQCAMSERHLDESGRWVYHHAGDFVVENQNSPVWVKFSMLQIDCTHTKGGL 271
Query: 340 CVDSVLIC 317
C+D V+IC
Sbjct: 272 CLDCVIIC 279
>gb|AAM92303.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 310
Score = 95.1 bits (235), Expect = 4e-19
Identities = 43/75 (57%), Positives = 54/75 (71%)
Frame = -3
Query: 520 VKFQLTTSDGQHAESHSHLDNPGHWVLYHAGNFVSKNSNDLMNIKFSLSQIDCTHTKGGL 341
V+FQL+TSDGQH+ S L PG WVLYHAG+FV + + +KFS++QIDCTHTKGGL
Sbjct: 226 VRFQLSTSDGQHSLSQCSLGEPGSWVLYHAGDFVVSKPDQTIKLKFSMAQIDCTHTKGGL 285
Query: 340 CVDSVLICNSNARKE 296
CVDS I ++E
Sbjct: 286 CVDSAFIYPKGFQQE 300
>ref|NP_176497.1| unknown protein; protein id: At1g63090.1 [Arabidopsis thaliana]
gi|25366248|pir||C96656 unknown protein, 43836-42510
[imported] - Arabidopsis thaliana
gi|12323246|gb|AAG51598.1|AC010795_2 unknown protein;
43836-42510 [Arabidopsis thaliana]
Length = 289
Score = 89.0 bits (219), Expect = 3e-17
Identities = 42/77 (54%), Positives = 55/77 (70%), Gaps = 1/77 (1%)
Frame = -3
Query: 520 VKFQLTTSDGQHAESHSHLDNPGHWVLYHAGNFV-SKNSNDLMNIKFSLSQIDCTHTKGG 344
V+FQL+T DGQH+ S L G+W YHAG+FV K+ + IKFS++QIDCTHTKGG
Sbjct: 210 VRFQLSTEDGQHSSSQCMLTEAGNWSHYHAGDFVVGKSKSSSTKIKFSMTQIDCTHTKGG 269
Query: 343 LCVDSVLICNSNARKEL 293
LCVDSV++ S+ + L
Sbjct: 270 LCVDSVVVYPSSCKDRL 286
>gb|AAO22780.1| unknown protein [Arabidopsis thaliana]
Length = 188
Score = 89.0 bits (219), Expect = 3e-17
Identities = 42/77 (54%), Positives = 55/77 (70%), Gaps = 1/77 (1%)
Frame = -3
Query: 520 VKFQLTTSDGQHAESHSHLDNPGHWVLYHAGNFV-SKNSNDLMNIKFSLSQIDCTHTKGG 344
V+FQL+T DGQH+ S L G+W YHAG+FV K+ + IKFS++QIDCTHTKGG
Sbjct: 109 VRFQLSTEDGQHSSSQCMLTEAGNWSHYHAGDFVVGKSKSSSTKIKFSMTQIDCTHTKGG 168
Query: 343 LCVDSVLICNSNARKEL 293
LCVDSV++ S+ + L
Sbjct: 169 LCVDSVVVYPSSCKDRL 185
>ref|NP_567108.1| putative protein; protein id: At3g61060.1, supported by cDNA:
gi_14334587 [Arabidopsis thaliana]
Length = 254
Score = 85.9 bits (211), Expect = 3e-16
Identities = 43/77 (55%), Positives = 52/77 (66%), Gaps = 1/77 (1%)
Frame = -3
Query: 520 VKFQLTTSDGQHAESHSHLDN-PGHWVLYHAGNFVSKNSNDLMNIKFSLSQIDCTHTKGG 344
V+FQL TSD Q A S +L+N PG W YH G+F N + IKFS++QIDCTHTKGG
Sbjct: 174 VRFQLATSDNQQAVSLCYLNNNPGSWSHYHVGDFKVTNPDVSTGIKFSMTQIDCTHTKGG 233
Query: 343 LCVDSVLICNSNARKEL 293
LC+DSVLI KE+
Sbjct: 234 LCIDSVLILPKECAKEV 250
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 429,154,709
Number of Sequences: 1393205
Number of extensions: 8900050
Number of successful extensions: 23070
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23053
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
