Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003958A_C01 KMC003958A_c01
(557 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172120.2| acyl-CoA oxidase ACX3, putative; protein id: At... 113 1e-24
pir||G86198 hypothetical protein [imported] - Arabidopsis thalia... 113 2e-24
ref|NP_172119.1| acyl-CoA oxidase, putative; protein id: At1g062... 113 2e-24
gb|AAF73843.1|AF207994_1 acyl-CoA oxidase ACX3 [Arabidopsis thal... 113 2e-24
ref|NP_187325.1| unknown protein; protein id: At3g06690.1 [Arabi... 113 2e-24
>ref|NP_172120.2| acyl-CoA oxidase ACX3, putative; protein id: At1g06310.1, supported
by cDNA: gi_20466226, supported by cDNA: gi_8163757,
supported by cDNA: gi_8515708 [Arabidopsis thaliana]
gi|25406914|pir||H86198 hypothetical protein [imported]
- Arabidopsis thaliana
gi|8927669|gb|AAF82160.1|AC068143_2 Contains similarity
to an acyl-CoA oxidase (ASX2) mRNA from Arabidopsis
thaliana gb|AF057043 and contains an acyl-CoA oxidase
PF|01756 domain
Length = 675
Score = 113 bits (283), Expect = 1e-24
Identities = 52/75 (69%), Positives = 64/75 (85%)
Frame = -3
Query: 555 LLRSLYALICVDEDAAFLRYGYLSTQNAAAVRKEVPKLCAELRPHALALVSSFGIPDAFL 376
L+RS+YALI ++ED + LRYG+LS N VRKEV KLC ELRPHALALV+SFGIPDAFL
Sbjct: 600 LVRSMYALISLEEDPSLLRYGHLSRDNVGDVRKEVSKLCGELRPHALALVASFGIPDAFL 659
Query: 375 SPIAYDWVDSNSWGS 331
SPIA++WV++N+W S
Sbjct: 660 SPIAFNWVEANAWSS 674
>pir||G86198 hypothetical protein [imported] - Arabidopsis thaliana
gi|8927668|gb|AAF82159.1|AC068143_1 Contains similarity
to an acyl-CoA oxidase from Myxococcus xanthus
gb|AF013216 and contains an acyl-CoA oxidase PF|01756
domain. EST gb|AI997124 comes from this gene.
[Arabidopsis thaliana]
Length = 419
Score = 113 bits (282), Expect = 2e-24
Identities = 51/75 (68%), Positives = 64/75 (85%)
Frame = -3
Query: 555 LLRSLYALICVDEDAAFLRYGYLSTQNAAAVRKEVPKLCAELRPHALALVSSFGIPDAFL 376
L+RS+YALI ++ED + LRYGYLS N VR+EV KLC ELRPHALALV+SFGIPD+FL
Sbjct: 344 LVRSMYALISLEEDPSLLRYGYLSQDNVGDVRREVSKLCGELRPHALALVTSFGIPDSFL 403
Query: 375 SPIAYDWVDSNSWGS 331
SPIA++WV++N+W S
Sbjct: 404 SPIAFNWVEANAWSS 418
>ref|NP_172119.1| acyl-CoA oxidase, putative; protein id: At1g06290.1 [Arabidopsis
thaliana] gi|8515709|gb|AAF76137.1|AF253474_1 acyl-CoA
oxidase [Arabidopsis thaliana]
gi|20466227|gb|AAM20431.1| acyl-CoA oxidase ACX3
[Arabidopsis thaliana]
Length = 675
Score = 113 bits (282), Expect = 2e-24
Identities = 51/75 (68%), Positives = 64/75 (85%)
Frame = -3
Query: 555 LLRSLYALICVDEDAAFLRYGYLSTQNAAAVRKEVPKLCAELRPHALALVSSFGIPDAFL 376
L+RS+YALI ++ED + LRYGYLS N VR+EV KLC ELRPHALALV+SFGIPD+FL
Sbjct: 600 LVRSMYALISLEEDPSLLRYGYLSQDNVGDVRREVSKLCGELRPHALALVTSFGIPDSFL 659
Query: 375 SPIAYDWVDSNSWGS 331
SPIA++WV++N+W S
Sbjct: 660 SPIAFNWVEANAWSS 674
>gb|AAF73843.1|AF207994_1 acyl-CoA oxidase ACX3 [Arabidopsis thaliana]
Length = 675
Score = 113 bits (282), Expect = 2e-24
Identities = 51/75 (68%), Positives = 64/75 (85%)
Frame = -3
Query: 555 LLRSLYALICVDEDAAFLRYGYLSTQNAAAVRKEVPKLCAELRPHALALVSSFGIPDAFL 376
L+RS+YALI ++ED + LRYGYLS N VR+EV KLC ELRPHALALV+SFGIPD+FL
Sbjct: 600 LVRSMYALISLEEDPSLLRYGYLSQDNVGDVRREVSKLCGELRPHALALVTSFGIPDSFL 659
Query: 375 SPIAYDWVDSNSWGS 331
SPIA++WV++N+W S
Sbjct: 660 SPIAFNWVEANAWSS 674
>ref|NP_187325.1| unknown protein; protein id: At3g06690.1 [Arabidopsis thaliana]
gi|12321917|gb|AAG50996.1|AC036106_9 unknown protein;
4820-5433 [Arabidopsis thaliana]
Length = 98
Score = 113 bits (282), Expect = 2e-24
Identities = 51/75 (68%), Positives = 64/75 (85%)
Frame = -3
Query: 555 LLRSLYALICVDEDAAFLRYGYLSTQNAAAVRKEVPKLCAELRPHALALVSSFGIPDAFL 376
L+RS+YALI ++ED + LRYGYLS N VR+EV KLC ELRPHALALV+SFGIPD+FL
Sbjct: 23 LVRSMYALISLEEDPSLLRYGYLSQDNVGDVRREVSKLCGELRPHALALVTSFGIPDSFL 82
Query: 375 SPIAYDWVDSNSWGS 331
SPIA++WV++N+W S
Sbjct: 83 SPIAFNWVEANTWSS 97
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 459,659,876
Number of Sequences: 1393205
Number of extensions: 9557007
Number of successful extensions: 23419
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 22707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23373
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
