Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003955A_C01 KMC003955A_c01
(405 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194909.2| enoyl-CoA hydratase - like protein; protein id:... 71 4e-12
pir||T06303 enoyl-CoA hydratase homolog F11C18.10 - Arabidopsis ... 62 1e-09
gb|AAG13484.1|AC026758_21 putative enoyl-CoA-hydratase [Oryza sa... 62 2e-09
ref|NP_191610.1| enoyl-CoA-hydratase - like protein; protein id:... 59 2e-08
gb|AAL17694.1| wound-responsive protein 15.46 [Castanea sativa] 52 2e-06
>ref|NP_194909.2| enoyl-CoA hydratase - like protein; protein id: At4g31810.1,
supported by cDNA: gi_19424018, supported by cDNA:
gi_21281144 [Arabidopsis thaliana]
gi|19424019|gb|AAL87270.1| putative enoyl-CoA hydratase
[Arabidopsis thaliana] gi|21281145|gb|AAM45067.1|
putative enoyl-CoA hydratase [Arabidopsis thaliana]
Length = 409
Score = 70.9 bits (172), Expect = 4e-12
Identities = 34/51 (66%), Positives = 41/51 (79%), Gaps = 3/51 (5%)
Frame = -3
Query: 403 RMVDKDFTPKWDPPSLKDVSEDMVEHHFYPFSEV---ESELVLPTALREPY 260
R+VDKDF PKWDPP L+DVS+DMV+ +F P SE+ +SEL LPTA REPY
Sbjct: 358 RLVDKDFAPKWDPPRLEDVSKDMVDCYFTPASELDDSDSELKLPTAQREPY 408
>pir||T06303 enoyl-CoA hydratase homolog F11C18.10 - Arabidopsis thaliana
gi|4584520|emb|CAB40751.1| enoyl-CoA hydratase-like
protein [Arabidopsis thaliana]
gi|7270084|emb|CAB79899.1| enoyl-CoA hydratase-like
protein [Arabidopsis thaliana]
Length = 414
Score = 62.4 bits (150), Expect = 1e-09
Identities = 34/62 (54%), Positives = 41/62 (65%), Gaps = 14/62 (22%)
Frame = -3
Query: 403 RMVDKDFTPK-----------WDPPSLKDVSEDMVEHHFYPFSEV---ESELVLPTALRE 266
R+VDKDF PK WDPP L+DVS+DMV+ +F P SE+ +SEL LPTA RE
Sbjct: 352 RLVDKDFAPKVHTNISASKLDWDPPRLEDVSKDMVDCYFTPASELDDSDSELKLPTAQRE 411
Query: 265 PY 260
PY
Sbjct: 412 PY 413
>gb|AAG13484.1|AC026758_21 putative enoyl-CoA-hydratase [Oryza sativa (japonica
cultivar-group)]
Length = 490
Score = 62.0 bits (149), Expect = 2e-09
Identities = 27/49 (55%), Positives = 35/49 (71%)
Frame = -3
Query: 403 RMVDKDFTPKWDPPSLKDVSEDMVEHHFYPFSEVESELVLPTALREPYM 257
R+V+KD PKWDPP+L+ VS DMV+ +F P E E EL LPT RE ++
Sbjct: 442 RLVEKDLAPKWDPPALEYVSADMVDSYFAPLGEFEPELTLPTESREAFV 490
>ref|NP_191610.1| enoyl-CoA-hydratase - like protein; protein id: At3g60510.1
[Arabidopsis thaliana] gi|11357284|pir||T47862
enoyl-CoA-hydratase-like protein - Arabidopsis thaliana
gi|7287999|emb|CAB81837.1| enoyl-CoA-hydratase-like
protein [Arabidopsis thaliana]
Length = 483
Score = 58.5 bits (140), Expect = 2e-08
Identities = 26/46 (56%), Positives = 33/46 (71%)
Frame = -3
Query: 403 RMVDKDFTPKWDPPSLKDVSEDMVEHHFYPFSEVESELVLPTALRE 266
R++DKD PKWDPPSL+ VSEDMV+ +F + E +L LP LRE
Sbjct: 436 RLIDKDEAPKWDPPSLEKVSEDMVDDYFCALTPTEPDLDLPVKLRE 481
>gb|AAL17694.1| wound-responsive protein 15.46 [Castanea sativa]
Length = 141
Score = 51.6 bits (122), Expect = 2e-06
Identities = 22/38 (57%), Positives = 29/38 (75%)
Frame = -3
Query: 373 WDPPSLKDVSEDMVEHHFYPFSEVESELVLPTALREPY 260
W+PP L+ VS+DMVEH+F P S+ E EL LPT +RE +
Sbjct: 103 WNPPRLEQVSKDMVEHYFSPLSKSEPELELPTEVREAF 140
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 337,271,279
Number of Sequences: 1393205
Number of extensions: 6353748
Number of successful extensions: 14359
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 14102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14355
length of database: 448,689,247
effective HSP length: 110
effective length of database: 295,436,697
effective search space used: 7090480728
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
