Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003954A_C01 KMC003954A_c01
(495 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192962.1| nucleotide sugar epimerase -like protein; prote... 179 2e-44
gb|AAK93670.1| putative nucleotide sugar epimerase [Arabidopsis ... 178 3e-44
gb|AAM61323.1| nucleotide sugar epimerase, putative [Arabidopsis... 164 5e-40
ref|NP_171702.1| nucleotide sugar epimerase, putative; protein i... 164 5e-40
ref|NP_191922.1| putative nucleotide sugar epimerase; protein id... 164 5e-40
>ref|NP_192962.1| nucleotide sugar epimerase -like protein; protein id: At4g12250.1,
supported by cDNA: gi_15293118 [Arabidopsis thaliana]
gi|11358591|pir||T48135 nucleotide sugar epimerase-like
protein - Arabidopsis thaliana
gi|5281036|emb|CAB45972.1| nucleotide sugar
epimerase-like protein [Arabidopsis thaliana]
gi|7267926|emb|CAB78268.1| nucleotide sugar
epimerase-like protein [Arabidopsis thaliana]
gi|23297355|gb|AAN12948.1| putative nucleotide sugar
epimerase [Arabidopsis thaliana]
Length = 436
Score = 179 bits (453), Expect = 2e-44
Identities = 97/140 (69%), Positives = 109/140 (77%), Gaps = 7/140 (5%)
Frame = +2
Query: 95 LSRLTLCSSFFLAFTLLLFFFILSPPPPPPAAPRRVLGDS-------WGGPLWEKRVAKS 253
LS+LTL +S FLA L LF+ +LSPPP P RR L DS +GG WEK+V KS
Sbjct: 33 LSKLTLWASLFLA--LFLFYLVLSPPPSPS---RRNLNDSSSISAAKYGGSHWEKQVRKS 87
Query: 254 ARRTSASGLTVLVTGAAGFVGTHVSLALKRRGDGVLGLDNFNRYYDPNLKRARQRLLDRA 433
AR S GLTVLVTGA+GFVGTHVS+AL+RRGDGVLGLDNFNRYYDP LKRARQ LL+R+
Sbjct: 88 ARPRSHGGLTVLVTGASGFVGTHVSIALRRRGDGVLGLDNFNRYYDPKLKRARQGLLERS 147
Query: 434 GVFVVSGDVNDATLLRKLFD 493
GVFVV GD+NDA LLRKLFD
Sbjct: 148 GVFVVEGDINDAVLLRKLFD 167
>gb|AAK93670.1| putative nucleotide sugar epimerase [Arabidopsis thaliana]
Length = 436
Score = 178 bits (452), Expect = 3e-44
Identities = 97/140 (69%), Positives = 109/140 (77%), Gaps = 7/140 (5%)
Frame = +2
Query: 95 LSRLTLCSSFFLAFTLLLFFFILSPPPPPPAAPRRVLGDS-------WGGPLWEKRVAKS 253
LS+LTL +S FLA L LF+ +LSPPP P RR L DS +GG WEK+V KS
Sbjct: 33 LSKLTLWASLFLA--LFLFYLVLSPPPSPS---RRNLNDSSSISAAKYGGSHWEKQVRKS 87
Query: 254 ARRTSASGLTVLVTGAAGFVGTHVSLALKRRGDGVLGLDNFNRYYDPNLKRARQRLLDRA 433
AR S GLTVLVTGA+GFVGTHVS+AL+RRGDGVLGLDNFNRYYDP LKRARQ LL+R+
Sbjct: 88 ARPRSHGGLTVLVTGASGFVGTHVSIALQRRGDGVLGLDNFNRYYDPKLKRARQGLLERS 147
Query: 434 GVFVVSGDVNDATLLRKLFD 493
GVFVV GD+NDA LLRKLFD
Sbjct: 148 GVFVVEGDINDAVLLRKLFD 167
>gb|AAM61323.1| nucleotide sugar epimerase, putative [Arabidopsis thaliana]
Length = 419
Score = 164 bits (415), Expect = 5e-40
Identities = 85/145 (58%), Positives = 105/145 (71%)
Frame = +2
Query: 59 PIFTTASAIHSSLSRLTLCSSFFLAFTLLLFFFILSPPPPPPAAPRRVLGDSWGGPLWEK 238
P F + SS+++L S F F LL FF SP P ++ R + SWGGP WEK
Sbjct: 6 PFFLHRTRWQSSVAKLAFWSLVF--FGLLFIFFYRSPISNPDSSRRSLRTYSWGGPAWEK 63
Query: 239 RVAKSARRTSASGLTVLVTGAAGFVGTHVSLALKRRGDGVLGLDNFNRYYDPNLKRARQR 418
RV SAR + +G++VLVTGAAGFVGTHVS ALKRRGDGVLGLDNFN YYD +LKR+RQ
Sbjct: 64 RVRSSARVRTRNGVSVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDTSLKRSRQA 123
Query: 419 LLDRAGVFVVSGDVNDATLLRKLFD 493
LL+R+GVF+V GD+ND +LL+KLF+
Sbjct: 124 LLERSGVFIVEGDINDLSLLKKLFE 148
>ref|NP_171702.1| nucleotide sugar epimerase, putative; protein id: At1g02000.1,
supported by cDNA: 116833., supported by cDNA:
gi_12248040 [Arabidopsis thaliana]
gi|25518289|pir||A86152 hypothetical protein F22M8.13
[imported] - Arabidopsis thaliana
gi|8570451|gb|AAF76478.1|AC020622_12 Contains similarity
to CAPI protein from Staphylococcus aureus gi|P39858 and
contains a NAD dependent epimerase/dehydratase PF|01370
domain. ESTs gb|N97076, gb|AI997010 come from this
gene. [Arabidopsis thaliana]
gi|12248041|gb|AAG50112.1|AF334734_1 putative nucleotide
sugar epimerase [Arabidopsis thaliana]
Length = 434
Score = 164 bits (415), Expect = 5e-40
Identities = 85/145 (58%), Positives = 105/145 (71%)
Frame = +2
Query: 59 PIFTTASAIHSSLSRLTLCSSFFLAFTLLLFFFILSPPPPPPAAPRRVLGDSWGGPLWEK 238
P F + SS+++L S F F LL FF SP P ++ R + SWGGP WEK
Sbjct: 21 PFFLHRTRWQSSVAKLAFWSLVF--FGLLFIFFYRSPISNPDSSRRSLRTYSWGGPAWEK 78
Query: 239 RVAKSARRTSASGLTVLVTGAAGFVGTHVSLALKRRGDGVLGLDNFNRYYDPNLKRARQR 418
RV SAR + +G++VLVTGAAGFVGTHVS ALKRRGDGVLGLDNFN YYD +LKR+RQ
Sbjct: 79 RVRSSARVRTRNGVSVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDTSLKRSRQA 138
Query: 419 LLDRAGVFVVSGDVNDATLLRKLFD 493
LL+R+GVF+V GD+ND +LL+KLF+
Sbjct: 139 LLERSGVFIVEGDINDLSLLKKLFE 163
>ref|NP_191922.1| putative nucleotide sugar epimerase; protein id: At4g00110.1
[Arabidopsis thaliana] gi|7486537|pir||T01339
hypothetical protein F6N15.16 - Arabidopsis thaliana
gi|3193316|gb|AAC19298.1| contains similarity to
nucleotide sugar epimerases [Arabidopsis thaliana]
gi|7267098|emb|CAB80769.1| putative nucleotide sugar
epimerase [Arabidopsis thaliana]
Length = 430
Score = 164 bits (415), Expect = 5e-40
Identities = 87/137 (63%), Positives = 101/137 (73%), Gaps = 2/137 (1%)
Frame = +2
Query: 89 SSLSRLTLCSSFFLAFTLLLFFFILSPPPPPPAAPRR--VLGDSWGGPLWEKRVAKSARR 262
SS+++L S F+ L+ FF SP PA P R + SWGGP WEKRV SAR
Sbjct: 28 SSVAKLAFWSLVFVG--LIFIFFYRSPVSSNPADPSRRSLRTYSWGGPAWEKRVRSSARL 85
Query: 263 TSASGLTVLVTGAAGFVGTHVSLALKRRGDGVLGLDNFNRYYDPNLKRARQRLLDRAGVF 442
+ G +VLVTGAAGFVGTHVS ALKRRGDGVLGLDNFN YYDP+LKRARQ LL+R+GVF
Sbjct: 86 RTRRGFSVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKRARQALLERSGVF 145
Query: 443 VVSGDVNDATLLRKLFD 493
VV GD+NDA LL+KLF+
Sbjct: 146 VVEGDINDAALLKKLFE 162
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 488,824,129
Number of Sequences: 1393205
Number of extensions: 12975445
Number of successful extensions: 191183
Number of sequences better than 10.0: 4310
Number of HSP's better than 10.0 without gapping: 98304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164224
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
