Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003950A_C01 KMC003950A_c01
(517 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC32158.1| hypothetical protein [Picea mariana] 55 5e-07
gb|AAF02452.1|AF127435_1 unknown [Picea abies] gi|6049100|gb|AAF... 54 8e-07
gb|AAC32157.1| hypothetical protein [Picea mariana] gi|2996134|g... 54 8e-07
pir||T51959 hypothetical protein [imported] - Picea mariana gi|2... 54 8e-07
ref|NP_198681.1| putative protein; protein id: At5g38650.1, supp... 52 5e-06
>gb|AAC32158.1| hypothetical protein [Picea mariana]
Length = 46
Score = 55.1 bits (131), Expect = 5e-07
Identities = 25/33 (75%), Positives = 27/33 (81%)
Frame = -2
Query: 282 DPREPETSLPLDMHHGMEVRLGLSKGPVNLSIV 184
DPRE ET +P DMHHGMEVRLGLSKGPV S +
Sbjct: 14 DPRESETFVPADMHHGMEVRLGLSKGPVCRSFI 46
>gb|AAF02452.1|AF127435_1 unknown [Picea abies] gi|6049100|gb|AAF02453.1|AF127436_1 unknown
[Picea abies]
Length = 48
Score = 54.3 bits (129), Expect = 8e-07
Identities = 24/28 (85%), Positives = 25/28 (88%)
Frame = -2
Query: 282 DPREPETSLPLDMHHGMEVRLGLSKGPV 199
DPRE ET +P DMHHGMEVRLGLSKGPV
Sbjct: 16 DPRESETFVPADMHHGMEVRLGLSKGPV 43
>gb|AAC32157.1| hypothetical protein [Picea mariana] gi|2996134|gb|AAC32159.1|
hypothetical protein [Picea mariana]
Length = 46
Score = 54.3 bits (129), Expect = 8e-07
Identities = 24/28 (85%), Positives = 25/28 (88%)
Frame = -2
Query: 282 DPREPETSLPLDMHHGMEVRLGLSKGPV 199
DPRE ET +P DMHHGMEVRLGLSKGPV
Sbjct: 14 DPRESETFVPADMHHGMEVRLGLSKGPV 41
>pir||T51959 hypothetical protein [imported] - Picea mariana
gi|2982245|gb|AAC32110.1| hypothetical protein [Picea
mariana]
Length = 141
Score = 54.3 bits (129), Expect = 8e-07
Identities = 24/28 (85%), Positives = 25/28 (88%)
Frame = -2
Query: 282 DPREPETSLPLDMHHGMEVRLGLSKGPV 199
DPRE ET +P DMHHGMEVRLGLSKGPV
Sbjct: 109 DPRESETFVPADMHHGMEVRLGLSKGPV 136
>ref|NP_198681.1| putative protein; protein id: At5g38650.1, supported by cDNA:
42336., supported by cDNA: gi_19347882, supported by
cDNA: gi_21281208 [Arabidopsis thaliana]
gi|10176833|dbj|BAB10155.1|
gb|AAB95243.1~gene_id:MBB18.20~similar to unknown
protein [Arabidopsis thaliana]
gi|19347883|gb|AAL85998.1| unknown protein [Arabidopsis
thaliana] gi|21281209|gb|AAM45059.1| unknown protein
[Arabidopsis thaliana] gi|21593744|gb|AAM65711.1|
unknown [Arabidopsis thaliana]
Length = 141
Score = 51.6 bits (122), Expect = 5e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = -2
Query: 282 DPREPETSLPLDMHHGMEVRLGLSKGPVNLSIV 184
DPRE ET P+D HHGMEVRLGLSKGP + S +
Sbjct: 109 DPRESETLKPVDFHHGMEVRLGLSKGPASPSFM 141
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 430,786,739
Number of Sequences: 1393205
Number of extensions: 8663676
Number of successful extensions: 19522
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 19084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19507
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
