Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003949A_C01 KMC003949A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P26591|GLRK_LYMST Glutamate receptor precursor gi|9629|emb|CA... 33 2.3
pir||ACGAE glutamate receptor precursor - great pond snail gi|23... 33 2.3
ref|NP_372879.1| TcaB protein [Staphylococcus aureus subsp. aure... 32 5.1
gb|EAA15536.1| chloroquine resistance marker protein [Plasmodium... 31 8.7
>sp|P26591|GLRK_LYMST Glutamate receptor precursor gi|9629|emb|CAA42683.1| glutamate
receptor subunit [Lymnaea stagnalis]
Length = 917
Score = 33.1 bits (74), Expect = 2.3
Identities = 37/131 (28%), Positives = 54/131 (40%), Gaps = 4/131 (3%)
Frame = +1
Query: 46 MHY---KA*LSYDSQEGSS*LKQLVHVTNDANGLTEKASTNWHQTFPKFSLHISTKQTNV 216
+HY K YDS EG L+QL TN + K + I TK+
Sbjct: 145 VHYRWEKVAFYYDSDEGLVRLQQLFQATNK---------------YDKMIISIDTKRITS 189
Query: 217 VN*NNHKLEQPGK*LHSLLQGGE-RIIMTKPTQKKRCCLAKQTILKICNLSALNNLSHII 393
V H L++ LH + E R+++ T K A+Q ILK+ N S +NN
Sbjct: 190 VENGYHMLKE----LHLMDPEMEHRVLLDVRTDK-----AEQIILKVMNDSKINNAKFHF 240
Query: 394 LIYSYNIHQTN 426
L+ + + N
Sbjct: 241 LLGDLGMLEIN 251
>pir||ACGAE glutamate receptor precursor - great pond snail
gi|239628|gb|AAB20422.1| glutamate receptor subunit
[Lymnaea stagnalis=pond snail, Peptide, 917 aa]
gi|228242|prf||1801239A Glu receptor
Length = 917
Score = 33.1 bits (74), Expect = 2.3
Identities = 37/131 (28%), Positives = 54/131 (40%), Gaps = 4/131 (3%)
Frame = +1
Query: 46 MHY---KA*LSYDSQEGSS*LKQLVHVTNDANGLTEKASTNWHQTFPKFSLHISTKQTNV 216
+HY K YDS EG L+QL TN + K + I TK+
Sbjct: 145 VHYRWEKVAFYYDSDEGLVRLQQLFQATNK---------------YDKMIISIDTKRITS 189
Query: 217 VN*NNHKLEQPGK*LHSLLQGGE-RIIMTKPTQKKRCCLAKQTILKICNLSALNNLSHII 393
V H L++ LH + E R+++ T K A+Q ILK+ N S +NN
Sbjct: 190 VENGYHMLKE----LHLMDPEMEHRVLLDVRTDK-----AEQIILKVMNDSKINNAKFHF 240
Query: 394 LIYSYNIHQTN 426
L+ + + N
Sbjct: 241 LLGDLGMLEIN 251
>ref|NP_372879.1| TcaB protein [Staphylococcus aureus subsp. aureus Mu50]
gi|15927935|ref|NP_375468.1| TcaB protein
[Staphylococcus aureus subsp. aureus N315]
gi|21284005|ref|NP_647093.1| TcaB protein
[Staphylococcus aureus subsp. aureus MW2]
gi|25507397|pir||F90035 TcaB protein [imported] -
Staphylococcus aureus (strain N315)
gi|10946545|gb|AAG23889.1| TcaB [Staphylococcus aureus]
gi|13702306|dbj|BAB43447.1| TcaB protein [Staphylococcus
aureus subsp. aureus N315] gi|14248129|dbj|BAB58517.1|
TcaB protein [Staphylococcus aureus subsp. aureus Mu50]
gi|21205448|dbj|BAB96141.1| TcaB protein [Staphylococcus
aureus subsp. aureus MW2]
Length = 402
Score = 32.0 bits (71), Expect = 5.1
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Frame = -1
Query: 373 LVLKGCRFSIWFVL----PSSIVSFVSVLSL*FSPLLAAMNVTICLAVLVYGYFSSQHLS 206
++++G F I F P I + ++ FS + A + +T+ ++ + GY S
Sbjct: 223 MLIQGMTFVILFTYISASPFIIQKIYGMTAIQFSWMFAGIGITLIISSQLTGYLVDFIDS 282
Query: 205 V*LIYEAKILGMFGASLLRLSLLNHWH 125
L+ ++ + G L+ + LLNHW+
Sbjct: 283 QKLMRGMTMIQIIGVILVTIVLLNHWN 309
>gb|EAA15536.1| chloroquine resistance marker protein [Plasmodium yoelii yoelii]
Length = 2788
Score = 31.2 bits (69), Expect = 8.7
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Frame = +1
Query: 157 NWHQTFPK---FSLHISTKQTNVV--N*NNHKLEQPGK*LHSLLQGGERIIMTKPT---- 309
N + FP F I+ K+ N V N +N LEQ + L + I P
Sbjct: 1475 NHYSLFPNLKFFKNKITPKKQNTVTINNDNSNLEQRKE----NLSNNDNITNLSPNVGII 1530
Query: 310 -QKKRCCLAKQTILKICNLSALNNLSHIILIYSYNIHQTN 426
KK+CCL +L NL NN+++ ++ ++ +TN
Sbjct: 1531 KDKKQCCLRFMFVLNDINLE--NNMNNTTIVINFYFQKTN 1568
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 437,776,357
Number of Sequences: 1393205
Number of extensions: 8399828
Number of successful extensions: 18388
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18388
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
