Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003948A_C01 KMC003948A_c01
(622 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA69931.1| PR10-1 protein [Medicago truncatula] gi|13928069... 169 2e-41
sp|Q43560|PR1_MEDSA Class-10 pathogenesis-related protein 1 (MSP... 167 8e-41
pir||T09526 stress response gene 1 - alfalfa gi|1136333|gb|AAB58... 166 3e-40
emb|CAC37691.1| class 10 PR protein [Medicago sativa] 163 1e-39
sp|Q06930|AB18_PEA ABA-responsive protein ABR18 gi|629632|pir||S... 155 5e-37
>emb|CAA69931.1| PR10-1 protein [Medicago truncatula] gi|13928069|emb|CAC37690.1|
class 10 PR protein [Medicago sativa]
Length = 157
Score = 169 bits (429), Expect = 2e-41
Identities = 80/119 (67%), Positives = 97/119 (81%)
Frame = -3
Query: 620 SVEFVEGDSTAVGAVKKITINEGGEDKYVLHKIDAIDEAHFGYNYSVIGGDGLPDAAEKI 441
S+E VEG+ A G +KK+T EGGE KY LHK+D +D+ +F YNYS++GG GLPD EKI
Sbjct: 40 SIEIVEGNGGA-GTIKKLTFVEGGETKYDLHKVDLVDDVNFAYNYSIVGGGGLPDTVEKI 98
Query: 440 SFESKLAAGPDGGSIAKLTVHFHLKGDAKPTEAELKEGKEKGDGLFKAVEGYVLANPNY 264
SFESKL+AGPDGGSIAKLTV + KGDA P+E E+K GK +GDGLFKA+EGYVLANP+Y
Sbjct: 99 SFESKLSAGPDGGSIAKLTVKYFTKGDAAPSEEEIKGGKARGDGLFKALEGYVLANPDY 157
>sp|Q43560|PR1_MEDSA Class-10 pathogenesis-related protein 1 (MSPR10-1)
gi|7442207|pir||T09659 pathogenesis-related protein
class 10 - alfalfa gi|1419683|emb|CAA67375.1| PR protein
from class 10 [Medicago sativa]
Length = 157
Score = 167 bits (424), Expect = 8e-41
Identities = 79/119 (66%), Positives = 96/119 (80%)
Frame = -3
Query: 620 SVEFVEGDSTAVGAVKKITINEGGEDKYVLHKIDAIDEAHFGYNYSVIGGDGLPDAAEKI 441
S+E VEG+ A G +KK+T EGGE KY LHK+D +D+ +F YNYS++GG GLPD EKI
Sbjct: 40 SIEIVEGNGGA-GTIKKLTFVEGGETKYDLHKVDLVDDVNFAYNYSIVGGGGLPDTVEKI 98
Query: 440 SFESKLAAGPDGGSIAKLTVHFHLKGDAKPTEAELKEGKEKGDGLFKAVEGYVLANPNY 264
SFESKL+AGPDGGS AKLTV + KGDA P+E E+K GK +GDGLFKA+EGYVLANP+Y
Sbjct: 99 SFESKLSAGPDGGSTAKLTVKYFTKGDAAPSEEEIKGGKARGDGLFKALEGYVLANPDY 157
>pir||T09526 stress response gene 1 - alfalfa gi|1136333|gb|AAB58315.1| Srg1
[Medicago sativa]
Length = 157
Score = 166 bits (419), Expect = 3e-40
Identities = 79/119 (66%), Positives = 95/119 (79%)
Frame = -3
Query: 620 SVEFVEGDSTAVGAVKKITINEGGEDKYVLHKIDAIDEAHFGYNYSVIGGDGLPDAAEKI 441
S+E VEG+ A G +KK T EGGE KY LHK+D +D+ +F YNYS++GG GLPD EKI
Sbjct: 40 SIEIVEGNGGA-GTIKKPTFVEGGETKYDLHKVDLVDDVNFAYNYSIVGGGGLPDTVEKI 98
Query: 440 SFESKLAAGPDGGSIAKLTVHFHLKGDAKPTEAELKEGKEKGDGLFKAVEGYVLANPNY 264
SFESKL+AGPDGGS AKLTV + KGDA P+E E+K GK +GDGLFKA+EGYVLANP+Y
Sbjct: 99 SFESKLSAGPDGGSTAKLTVKYFTKGDAAPSEEEIKGGKARGDGLFKALEGYVLANPDY 157
>emb|CAC37691.1| class 10 PR protein [Medicago sativa]
Length = 158
Score = 163 bits (413), Expect = 1e-39
Identities = 76/119 (63%), Positives = 97/119 (80%)
Frame = -3
Query: 620 SVEFVEGDSTAVGAVKKITINEGGEDKYVLHKIDAIDEAHFGYNYSVIGGDGLPDAAEKI 441
S++ VEG+ + G +KK+T EGGE KY LHK+D +D+A++ YNYS++GGD LPD EKI
Sbjct: 40 SIDIVEGNGGS-GTIKKLTFVEGGETKYDLHKVDLVDDANWAYNYSIVGGDSLPDTVEKI 98
Query: 440 SFESKLAAGPDGGSIAKLTVHFHLKGDAKPTEAELKEGKEKGDGLFKAVEGYVLANPNY 264
SFE+KL+AGP+GGSIAKL+V + KGDA P+E ELK GK KGDGLFKA+EGY LANP+Y
Sbjct: 99 SFEAKLSAGPNGGSIAKLSVKYFTKGDATPSEEELKSGKAKGDGLFKALEGYCLANPDY 157
>sp|Q06930|AB18_PEA ABA-responsive protein ABR18 gi|629632|pir||S42650
pathogenesis-related protein 18 - garden pea
gi|20633|emb|CAA78828.1| ABA-responsive protein [Pisum
sativum]
Length = 158
Score = 155 bits (391), Expect = 5e-37
Identities = 73/119 (61%), Positives = 92/119 (76%)
Frame = -3
Query: 620 SVEFVEGDSTAVGAVKKITINEGGEDKYVLHKIDAIDEAHFGYNYSVIGGDGLPDAAEKI 441
+VE +EG+ G VKK+T EGG+ YVLHK++AID+A F YNYS++GG G+ D EKI
Sbjct: 40 TVEILEGNG-GPGTVKKLTFVEGGQTLYVLHKVEAIDDAKFEYNYSIVGGVGISDIVEKI 98
Query: 440 SFESKLAAGPDGGSIAKLTVHFHLKGDAKPTEAELKEGKEKGDGLFKAVEGYVLANPNY 264
SFE+KL GP+GGS+ K+ V +H KGDAKP E E++EGK KGD LFKA+E YVLANPNY
Sbjct: 99 SFEAKLFEGPNGGSVGKMIVKYHTKGDAKPIEKEVEEGKAKGDALFKAIEAYVLANPNY 157
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 547,671,023
Number of Sequences: 1393205
Number of extensions: 12633332
Number of successful extensions: 38832
Number of sequences better than 10.0: 259
Number of HSP's better than 10.0 without gapping: 37133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38748
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
