Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003946A_C01 KMC003946A_c01
(504 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA08229.1| ebiP3024 [Anopheles gambiae str. PEST] 32 3.1
gb|AAA32115.1| apocytochrome b 31 7.0
sp|P00164|CYB_TRYBB Cytochrome b gi|65631|pir||CBUTB ubiquinol-c... 31 7.0
ref|NP_572296.1| CG15899-PB [Drosophila melanogaster] gi|2283179... 31 9.1
>gb|EAA08229.1| ebiP3024 [Anopheles gambiae str. PEST]
Length = 1764
Score = 32.3 bits (72), Expect = 3.1
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 343 FIVSLAIALQLANWSSQKRREKQKKRNRRCRFTLDKTIYGDTTS 474
F+++L + + +S K+RE ++ R R RFT T+ T +
Sbjct: 303 FMINLCLVVIATQFSETKKREMERMRQERARFTSSSTLASSTNN 346
>gb|AAA32115.1| apocytochrome b
Length = 350
Score = 31.2 bits (69), Expect = 7.0
Identities = 21/78 (26%), Positives = 35/78 (43%), Gaps = 13/78 (16%)
Frame = -3
Query: 316 LSCLPLHSLYVAPWNW----VTTFTQLFLHFRE*SPCKIKLSFVL---------CLYY*S 176
++ +P+ +++ W W + FT L LH + L F+L CL+Y
Sbjct: 130 IATVPILGIWLCYWIWGSEFINDFTLLKLHVLH-----VLLPFILLIILILHLFCLHY-- 182
Query: 175 GFCSTESFCSSFFLLCSR 122
F S+++FC F C R
Sbjct: 183 -FMSSDAFCDRFAFYCER 199
>sp|P00164|CYB_TRYBB Cytochrome b gi|65631|pir||CBUTB ubiquinol-cytochrome-c reductase
(EC 1.10.2.2) cytochrome b - Trypanosoma brucei
mitochondrion gi|578828|emb|CAA24915.1| apocytochrome b
[Trypanosoma brucei]
Length = 363
Score = 31.2 bits (69), Expect = 7.0
Identities = 21/78 (26%), Positives = 35/78 (43%), Gaps = 13/78 (16%)
Frame = -3
Query: 316 LSCLPLHSLYVAPWNW----VTTFTQLFLHFRE*SPCKIKLSFVL---------CLYY*S 176
++ +P+ +++ W W + FT L LH + L F+L CL+Y
Sbjct: 143 IATVPILGIWLCYWIWGSEFINDFTLLKLHVLH-----VLLPFILLIILILHLFCLHY-- 195
Query: 175 GFCSTESFCSSFFLLCSR 122
F S+++FC F C R
Sbjct: 196 -FMSSDAFCDRFAFYCER 212
>ref|NP_572296.1| CG15899-PB [Drosophila melanogaster] gi|22831794|gb|AAF46127.2|
CG15899-PB [Drosophila melanogaster]
Length = 2893
Score = 30.8 bits (68), Expect = 9.1
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 343 FIVSLAIALQLANWSSQKRREKQKKRNRRCRFTLDKTIYGDTTS 474
F+++L + + +S K+RE ++ R R R+T T+ T +
Sbjct: 307 FMINLCLVVIATQFSETKKREMERMRQERARYTSTSTLASSTNN 350
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 431,674,133
Number of Sequences: 1393205
Number of extensions: 8866271
Number of successful extensions: 18645
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18640
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
