KMC003945A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC003945A_C01 KMC003945A_c01
aagcaactattctagctagaatcatggcagaagtaatGAGGGAAAGCACAGAAATCTATT
CATTCCAACTTACATATTAACTTTTACATATTCTACGTAGTACGTACTACTTAGCTAATT
ACATGAATGTAGACATTTGTTTCAAACCAACAAAGACACTTTTTTTGTCTTTCTGTTCCC
ATACATCTTTTTCTTTCTTTTCTTCTGTCTTCAGCGAAAAATACAAAATGACCTTATATC
TACCCAAGCTCAACTTCCTTTTAGTGGCAGGGTAGAGCATGTACATTTCATTTCATGTGA
CTCATAACTCCCGCTCGCAGTGATCCATGTTTCCACTCCACCAAGCGTTGAAGAAAATAC
ATCACCTCATTGGGTTCCTGCAAAGAGTAAGATGCACTTGTGTCTTTGGGAAACTTCGAC
ACAAGAATGCCAAAGCCTTGTCCTCTGTCTCTTAATTTCTTGAACGCATCTTCATCAGAT
CGATCATCGCCAATATAAACAGGAAACACATCGCTGCAATGGGCCAATCCAAGTGACTCT
AA


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC003945A_C01 KMC003945A_c01
         (542 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC43453.1| putative protein [Arabidopsis thaliana] gi|28973...   124  6e-28
pir||A86481 probable trehalose-phosphatase [imported] - Arabidop...   119  2e-26
ref|NP_564464.1| trehalose-phosphatase, putative; protein id: At...   119  2e-26
gb|AAM63513.1| trehalose-phosphatase, putative [Arabidopsis thal...   119  2e-26
ref|NP_179809.1| putative trehalose-6-phosphate phosphatase; pro...   115  3e-25

>dbj|BAC43453.1| putative protein [Arabidopsis thaliana] gi|28973301|gb|AAO63975.1|
           unknown protein [Arabidopsis thaliana]
          Length = 349

 Score =  124 bits (312), Expect = 6e-28
 Identities = 62/78 (79%), Positives = 70/78 (89%)
 Frame = -1

Query: 542 LESLGLAHCSDVFPVYIGDDRSDEDAFKKLRDRGQGFGILVSKFPKDTSASYSLQEPNEV 363
           LESLG A+C+DVFP+YIGDDR+DEDAFK LR+R QG GILVSKFPK+TSASYSLQEP+EV
Sbjct: 273 LESLGYANCTDVFPLYIGDDRTDEDAFKVLRERRQGLGILVSKFPKETSASYSLQEPDEV 332

Query: 362 MYFLQRLVEWKHGSLRAG 309
           M FLQRLVEWK   LR+G
Sbjct: 333 MEFLQRLVEWK--QLRSG 348

>pir||A86481 probable trehalose-phosphatase [imported] - Arabidopsis thaliana
           gi|12322095|gb|AAG51089.1|AC027032_9
           trehalose-phosphatase, putative [Arabidopsis thaliana]
          Length = 366

 Score =  119 bits (299), Expect = 2e-26
 Identities = 58/76 (76%), Positives = 67/76 (87%)
 Frame = -1

Query: 542 LESLGLAHCSDVFPVYIGDDRSDEDAFKKLRDRGQGFGILVSKFPKDTSASYSLQEPNEV 363
           LESLG A+ +DV P+YIGDDR+DEDAFK LR++GQGFGILVSK PK+TSA+YSLQEP+EV
Sbjct: 289 LESLGFANSNDVLPIYIGDDRTDEDAFKVLRNKGQGFGILVSKIPKETSATYSLQEPSEV 348

Query: 362 MYFLQRLVEWKHGSLR 315
             FLQRLVEWK  SLR
Sbjct: 349 GEFLQRLVEWKQMSLR 364

>ref|NP_564464.1| trehalose-phosphatase, putative; protein id: At1g35910.1, supported
           by cDNA: 255364. [Arabidopsis thaliana]
          Length = 369

 Score =  119 bits (299), Expect = 2e-26
 Identities = 58/76 (76%), Positives = 67/76 (87%)
 Frame = -1

Query: 542 LESLGLAHCSDVFPVYIGDDRSDEDAFKKLRDRGQGFGILVSKFPKDTSASYSLQEPNEV 363
           LESLG A+ +DV P+YIGDDR+DEDAFK LR++GQGFGILVSK PK+TSA+YSLQEP+EV
Sbjct: 292 LESLGFANSNDVLPIYIGDDRTDEDAFKVLRNKGQGFGILVSKIPKETSATYSLQEPSEV 351

Query: 362 MYFLQRLVEWKHGSLR 315
             FLQRLVEWK  SLR
Sbjct: 352 GEFLQRLVEWKQMSLR 367

>gb|AAM63513.1| trehalose-phosphatase, putative [Arabidopsis thaliana]
          Length = 369

 Score =  119 bits (299), Expect = 2e-26
 Identities = 58/76 (76%), Positives = 67/76 (87%)
 Frame = -1

Query: 542 LESLGLAHCSDVFPVYIGDDRSDEDAFKKLRDRGQGFGILVSKFPKDTSASYSLQEPNEV 363
           LESLG A+ +DV P+YIGDDR+DEDAFK LR++GQGFGILVSK PK+TSA+YSLQEP+EV
Sbjct: 292 LESLGFANSNDVLPIYIGDDRTDEDAFKVLRNKGQGFGILVSKIPKETSATYSLQEPSEV 351

Query: 362 MYFLQRLVEWKHGSLR 315
             FLQRLVEWK  SLR
Sbjct: 352 GEFLQRLVEWKQMSLR 367

>ref|NP_179809.1| putative trehalose-6-phosphate phosphatase; protein id: At2g22190.1
           [Arabidopsis thaliana] gi|25354599|pir||A84610 probable
           trehalose-6-phosphate phosphatase [imported] -
           Arabidopsis thaliana gi|4567205|gb|AAD23621.1| putative
           trehalose-6-phosphate phosphatase [Arabidopsis thaliana]
          Length = 269

 Score =  115 bits (289), Expect = 3e-25
 Identities = 54/71 (76%), Positives = 64/71 (90%)
 Frame = -1

Query: 542 LESLGLAHCSDVFPVYIGDDRSDEDAFKKLRDRGQGFGILVSKFPKDTSASYSLQEPNEV 363
           LESLG  +C+DVFP+YIGDDR+DEDAFK LRD+ QG GILVSK+ K+T+ASYSLQEP+EV
Sbjct: 193 LESLGYDNCTDVFPIYIGDDRTDEDAFKILRDKKQGLGILVSKYAKETNASYSLQEPDEV 252

Query: 362 MYFLQRLVEWK 330
           M FL+RLVEWK
Sbjct: 253 MVFLERLVEWK 263

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 451,807,872
Number of Sequences: 1393205
Number of extensions: 9410334
Number of successful extensions: 26326
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 24405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26174
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 SPDL007e03_f BP052417 1 488
2 GNf088g06 BP073892 38 542
3 MR086g07_f BP082642 39 370
4 SPDL100e01_f BP058295 39 496




Lotus japonicus
Kazusa DNA Research Institute