KMC003945A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC003945A_C01 KMC003945A_c01
aagcaactattctagctagaatcatggcagaagtaatGAGGGAAAGCACAGAAATCTATT
CATTCCAACTTACATATTAACTTTTACATATTCTACGTAGTACGTACTACTTAGCTAATT
ACATGAATGTAGACATTTGTTTCAAACCAACAAAGACACTTTTTTTGTCTTTCTGTTCCC
ATACATCTTTTTCTTTCTTTTCTTCTGTCTTCAGCGAAAAATACAAAATGACCTTATATC
TACCCAAGCTCAACTTCCTTTTAGTGGCAGGGTAGAGCATGTACATTTCATTTCATGTGA
CTCATAACTCCCGCTCGCAGTGATCCATGTTTCCACTCCACCAAGCGTTGAAGAAAATAC
ATCACCTCATTGGGTTCCTGCAAAGAGTAAGATGCACTTGTGTCTTTGGGAAACTTCGAC
ACAAGAATGCCAAAGCCTTGTCCTCTGTCTCTTAATTTCTTGAACGCATCTTCATCAGAT
CGATCATCGCCAATATAAACAGGAAACACATCGCTGCAATGGGCCAATCCAAGTGACTCT
AA
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003945A_C01 KMC003945A_c01
(542 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC43453.1| putative protein [Arabidopsis thaliana] gi|28973... 124 6e-28
pir||A86481 probable trehalose-phosphatase [imported] - Arabidop... 119 2e-26
ref|NP_564464.1| trehalose-phosphatase, putative; protein id: At... 119 2e-26
gb|AAM63513.1| trehalose-phosphatase, putative [Arabidopsis thal... 119 2e-26
ref|NP_179809.1| putative trehalose-6-phosphate phosphatase; pro... 115 3e-25
>dbj|BAC43453.1| putative protein [Arabidopsis thaliana] gi|28973301|gb|AAO63975.1|
unknown protein [Arabidopsis thaliana]
Length = 349
Score = 124 bits (312), Expect = 6e-28
Identities = 62/78 (79%), Positives = 70/78 (89%)
Frame = -1
Query: 542 LESLGLAHCSDVFPVYIGDDRSDEDAFKKLRDRGQGFGILVSKFPKDTSASYSLQEPNEV 363
LESLG A+C+DVFP+YIGDDR+DEDAFK LR+R QG GILVSKFPK+TSASYSLQEP+EV
Sbjct: 273 LESLGYANCTDVFPLYIGDDRTDEDAFKVLRERRQGLGILVSKFPKETSASYSLQEPDEV 332
Query: 362 MYFLQRLVEWKHGSLRAG 309
M FLQRLVEWK LR+G
Sbjct: 333 MEFLQRLVEWK--QLRSG 348
>pir||A86481 probable trehalose-phosphatase [imported] - Arabidopsis thaliana
gi|12322095|gb|AAG51089.1|AC027032_9
trehalose-phosphatase, putative [Arabidopsis thaliana]
Length = 366
Score = 119 bits (299), Expect = 2e-26
Identities = 58/76 (76%), Positives = 67/76 (87%)
Frame = -1
Query: 542 LESLGLAHCSDVFPVYIGDDRSDEDAFKKLRDRGQGFGILVSKFPKDTSASYSLQEPNEV 363
LESLG A+ +DV P+YIGDDR+DEDAFK LR++GQGFGILVSK PK+TSA+YSLQEP+EV
Sbjct: 289 LESLGFANSNDVLPIYIGDDRTDEDAFKVLRNKGQGFGILVSKIPKETSATYSLQEPSEV 348
Query: 362 MYFLQRLVEWKHGSLR 315
FLQRLVEWK SLR
Sbjct: 349 GEFLQRLVEWKQMSLR 364
>ref|NP_564464.1| trehalose-phosphatase, putative; protein id: At1g35910.1, supported
by cDNA: 255364. [Arabidopsis thaliana]
Length = 369
Score = 119 bits (299), Expect = 2e-26
Identities = 58/76 (76%), Positives = 67/76 (87%)
Frame = -1
Query: 542 LESLGLAHCSDVFPVYIGDDRSDEDAFKKLRDRGQGFGILVSKFPKDTSASYSLQEPNEV 363
LESLG A+ +DV P+YIGDDR+DEDAFK LR++GQGFGILVSK PK+TSA+YSLQEP+EV
Sbjct: 292 LESLGFANSNDVLPIYIGDDRTDEDAFKVLRNKGQGFGILVSKIPKETSATYSLQEPSEV 351
Query: 362 MYFLQRLVEWKHGSLR 315
FLQRLVEWK SLR
Sbjct: 352 GEFLQRLVEWKQMSLR 367
>gb|AAM63513.1| trehalose-phosphatase, putative [Arabidopsis thaliana]
Length = 369
Score = 119 bits (299), Expect = 2e-26
Identities = 58/76 (76%), Positives = 67/76 (87%)
Frame = -1
Query: 542 LESLGLAHCSDVFPVYIGDDRSDEDAFKKLRDRGQGFGILVSKFPKDTSASYSLQEPNEV 363
LESLG A+ +DV P+YIGDDR+DEDAFK LR++GQGFGILVSK PK+TSA+YSLQEP+EV
Sbjct: 292 LESLGFANSNDVLPIYIGDDRTDEDAFKVLRNKGQGFGILVSKIPKETSATYSLQEPSEV 351
Query: 362 MYFLQRLVEWKHGSLR 315
FLQRLVEWK SLR
Sbjct: 352 GEFLQRLVEWKQMSLR 367
>ref|NP_179809.1| putative trehalose-6-phosphate phosphatase; protein id: At2g22190.1
[Arabidopsis thaliana] gi|25354599|pir||A84610 probable
trehalose-6-phosphate phosphatase [imported] -
Arabidopsis thaliana gi|4567205|gb|AAD23621.1| putative
trehalose-6-phosphate phosphatase [Arabidopsis thaliana]
Length = 269
Score = 115 bits (289), Expect = 3e-25
Identities = 54/71 (76%), Positives = 64/71 (90%)
Frame = -1
Query: 542 LESLGLAHCSDVFPVYIGDDRSDEDAFKKLRDRGQGFGILVSKFPKDTSASYSLQEPNEV 363
LESLG +C+DVFP+YIGDDR+DEDAFK LRD+ QG GILVSK+ K+T+ASYSLQEP+EV
Sbjct: 193 LESLGYDNCTDVFPIYIGDDRTDEDAFKILRDKKQGLGILVSKYAKETNASYSLQEPDEV 252
Query: 362 MYFLQRLVEWK 330
M FL+RLVEWK
Sbjct: 253 MVFLERLVEWK 263
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 451,807,872
Number of Sequences: 1393205
Number of extensions: 9410334
Number of successful extensions: 26326
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 24405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26174
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
SPDL007e03_f |
BP052417 |
1 |
488 |
2 |
GNf088g06 |
BP073892 |
38 |
542 |
3 |
MR086g07_f |
BP082642 |
39 |
370 |
4 |
SPDL100e01_f |
BP058295 |
39 |
496 |
|
Lotus japonicus
Kazusa DNA Research Institute