Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003944A_C01 KMC003944A_c01
(517 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA41028.1| ribosomal protein L7 [Mus musculus] gi|55489|emb... 134 8e-31
sp|P14148|RL7_MOUSE 60S RIBOSOMAL PROTEIN L7 gi|19483861|gb|AAH2... 134 8e-31
gb|AAA40064.1| ribosomal protein 134 8e-31
ref|XP_224811.1| similar to ribosomal protein L7, cytosolic [val... 134 8e-31
pir||R5RTL7 ribosomal protein L7, cytosolic [validated] - rat 133 1e-30
>emb|CAA41028.1| ribosomal protein L7 [Mus musculus] gi|55489|emb|CAA41029.1|
ribosomal protein L7 [Mus musculus]
Length = 154
Score = 134 bits (336), Expect = 8e-31
Identities = 59/104 (56%), Positives = 80/104 (76%), Gaps = 1/104 (0%)
Frame = -3
Query: 455 YPNLESIKELLYKKGHAKIDERKVSLTD-SIIGQELGKFGILCMEDMVHQIYNVGPHFKE 279
YPNL+S+ EL+YK+G+ KI++++++LTD S+I + LGKFGI+CMED++H+IY VG FKE
Sbjct: 50 YPNLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGKFGIICMEDLIHEIYTVGKRFKE 109
Query: 278 VVRFIWPFELNKPSDGFKGSKTLFKNGGDAGNREDSINELINKM 147
F+WPF+L+ P G K T F GGDAGNRED IN LI +M
Sbjct: 110 ANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRM 153
>sp|P14148|RL7_MOUSE 60S RIBOSOMAL PROTEIN L7 gi|19483861|gb|AAH25909.1| ribosomal
protein L7 [Mus musculus] gi|26341408|dbj|BAC34366.1|
unnamed protein product [Mus musculus]
gi|26353264|dbj|BAC40262.1| unnamed protein product [Mus
musculus]
Length = 270
Score = 134 bits (336), Expect = 8e-31
Identities = 59/104 (56%), Positives = 80/104 (76%), Gaps = 1/104 (0%)
Frame = -3
Query: 455 YPNLESIKELLYKKGHAKIDERKVSLTD-SIIGQELGKFGILCMEDMVHQIYNVGPHFKE 279
YPNL+S+ EL+YK+G+ KI++++++LTD S+I + LGKFGI+CMED++H+IY VG FKE
Sbjct: 166 YPNLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGKFGIICMEDLIHEIYTVGKRFKE 225
Query: 278 VVRFIWPFELNKPSDGFKGSKTLFKNGGDAGNREDSINELINKM 147
F+WPF+L+ P G K T F GGDAGNRED IN LI +M
Sbjct: 226 ANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRM 269
>gb|AAA40064.1| ribosomal protein
Length = 270
Score = 134 bits (336), Expect = 8e-31
Identities = 59/104 (56%), Positives = 80/104 (76%), Gaps = 1/104 (0%)
Frame = -3
Query: 455 YPNLESIKELLYKKGHAKIDERKVSLTD-SIIGQELGKFGILCMEDMVHQIYNVGPHFKE 279
YPNL+S+ EL+YK+G+ KI++++++LTD S+I + LGKFGI+CMED++H+IY VG FKE
Sbjct: 166 YPNLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGKFGIICMEDLIHEIYTVGKRFKE 225
Query: 278 VVRFIWPFELNKPSDGFKGSKTLFKNGGDAGNREDSINELINKM 147
F+WPF+L+ P G K T F GGDAGNRED IN LI +M
Sbjct: 226 ANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRM 269
>ref|XP_224811.1| similar to ribosomal protein L7, cytosolic [validated] - rat
[Rattus norvegicus]
Length = 240
Score = 134 bits (336), Expect = 8e-31
Identities = 59/104 (56%), Positives = 80/104 (76%), Gaps = 1/104 (0%)
Frame = -3
Query: 455 YPNLESIKELLYKKGHAKIDERKVSLTD-SIIGQELGKFGILCMEDMVHQIYNVGPHFKE 279
YPNL+S+ EL+YK+G+ KI++++++LTD S+I + LGKFGI+CMED++H+IY VG FKE
Sbjct: 136 YPNLKSVNELIYKRGYGKINKKRIALTDISLIARSLGKFGIICMEDLIHEIYTVGKRFKE 195
Query: 278 VVRFIWPFELNKPSDGFKGSKTLFKNGGDAGNREDSINELINKM 147
F+WPF+L+ P G K T F GGDAGNRED IN LI +M
Sbjct: 196 ANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRM 239
>pir||R5RTL7 ribosomal protein L7, cytosolic [validated] - rat
Length = 260
Score = 133 bits (335), Expect = 1e-30
Identities = 58/104 (55%), Positives = 80/104 (76%), Gaps = 1/104 (0%)
Frame = -3
Query: 455 YPNLESIKELLYKKGHAKIDERKVSLTD-SIIGQELGKFGILCMEDMVHQIYNVGPHFKE 279
YPNL+S+ EL+YK+G+ KI++++++LTD S++ + LGKFGI+CMED++H+IY VG FKE
Sbjct: 156 YPNLKSVNELIYKRGYGKINKKRIALTDNSLVARSLGKFGIICMEDLIHEIYTVGKRFKE 215
Query: 278 VVRFIWPFELNKPSDGFKGSKTLFKNGGDAGNREDSINELINKM 147
F+WPF+L+ P G K T F GGDAGNRED IN LI +M
Sbjct: 216 ANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRM 259
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 409,847,763
Number of Sequences: 1393205
Number of extensions: 8393972
Number of successful extensions: 16240
Number of sequences better than 10.0: 154
Number of HSP's better than 10.0 without gapping: 15836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16131
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
