Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003943A_C01 KMC003943A_c01
(490 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180754.1| molybdopterin synthase (CNX2); protein id: At2g... 74 1e-12
sp|Q39055|CNX2_ARATH Molybdopterin biosynthesis CNX2 protein (Mo... 74 1e-12
gb|AAM64798.1| molybdopterin synthase (CNX2) [Arabidopsis thaliana] 74 1e-12
gb|AAF67845.1|AF214016_1 molybdenum cofactor synthesis-step 1 pr... 59 4e-08
gb|AAF67847.1|AF214017_1 molybdenum cofactor synthesis-step 1 pr... 57 1e-07
>ref|NP_180754.1| molybdopterin synthase (CNX2); protein id: At2g31950.1 [Arabidopsis
thaliana] gi|20197844|gb|AAM15276.1| molybdopterin
synthase (CNX2) [Arabidopsis thaliana]
Length = 326
Score = 73.6 bits (179), Expect = 1e-12
Identities = 35/41 (85%), Positives = 37/41 (89%)
Frame = -1
Query: 487 GAEDHELREIIGAAVKRKKRSHAGMFDIAKTANRPMIHIGG 365
GA+D LREIIGAAVKRKK +HAGM DIAKTANRPMIHIGG
Sbjct: 286 GADDEALREIIGAAVKRKKAAHAGMLDIAKTANRPMIHIGG 326
>sp|Q39055|CNX2_ARATH Molybdopterin biosynthesis CNX2 protein (Molybdenum cofactor
biosynthesis enzyme CNX2) gi|25304517|pir||B84727
molybdopterin synthase (CNX2) [imported] - Arabidopsis
thaliana gi|662871|emb|CAA88107.1| Cnx2 [Arabidopsis
thaliana] gi|17529062|gb|AAL38741.1| unknown protein
[Arabidopsis thaliana] gi|20465495|gb|AAM20207.1|
putative molybdopterin synthase (CNX2) [Arabidopsis
thaliana]
Length = 390
Score = 73.6 bits (179), Expect = 1e-12
Identities = 35/41 (85%), Positives = 37/41 (89%)
Frame = -1
Query: 487 GAEDHELREIIGAAVKRKKRSHAGMFDIAKTANRPMIHIGG 365
GA+D LREIIGAAVKRKK +HAGM DIAKTANRPMIHIGG
Sbjct: 350 GADDEALREIIGAAVKRKKAAHAGMLDIAKTANRPMIHIGG 390
>gb|AAM64798.1| molybdopterin synthase (CNX2) [Arabidopsis thaliana]
Length = 390
Score = 73.6 bits (179), Expect = 1e-12
Identities = 35/41 (85%), Positives = 37/41 (89%)
Frame = -1
Query: 487 GAEDHELREIIGAAVKRKKRSHAGMFDIAKTANRPMIHIGG 365
GA+D LREIIGAAVKRKK +HAGM DIAKTANRPMIHIGG
Sbjct: 350 GADDEALREIIGAAVKRKKAAHAGMLDIAKTANRPMIHIGG 390
>gb|AAF67845.1|AF214016_1 molybdenum cofactor synthesis-step 1 protein A splice type I [Mus
musculus]
Length = 136
Score = 58.5 bits (140), Expect = 4e-08
Identities = 29/41 (70%), Positives = 32/41 (77%)
Frame = -1
Query: 487 GAEDHELREIIGAAVKRKKRSHAGMFDIAKTANRPMIHIGG 365
GA + EL IIGAAV RKKR HAGMF+IA+ NRPMI IGG
Sbjct: 96 GASEEELLRIIGAAVGRKKRQHAGMFNIAQMKNRPMILIGG 136
>gb|AAF67847.1|AF214017_1 molybdenum cofactor synthesis-step 1 protein A splice type I [Bos
taurus]
Length = 135
Score = 57.0 bits (136), Expect = 1e-07
Identities = 27/41 (65%), Positives = 32/41 (77%)
Frame = -1
Query: 487 GAEDHELREIIGAAVKRKKRSHAGMFDIAKTANRPMIHIGG 365
GA + EL +IGAAV RKKR HAGMF+I++ NRPMI IGG
Sbjct: 95 GASEEELLRVIGAAVGRKKRQHAGMFNISQMKNRPMILIGG 135
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 437,331,228
Number of Sequences: 1393205
Number of extensions: 9349852
Number of successful extensions: 17959
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 17682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17958
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
