Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003942A_C01 KMC003942A_c01
(406 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL99608.1|AF348412_1 cytosolic aldehyde dehydrogenase RF2C [... 122 1e-27
gb|AAL99609.1|AF348413_1 cytosolic aldehyde dehydrogenase RF2C [... 122 1e-27
dbj|BAA96794.1| cytosolic aldehyde dehydrogenase [Oryza sativa (... 116 6e-26
gb|AAL99610.1|AF348414_1 cytosolic aldehyde dehydrogenase RF2D [... 114 2e-25
gb|AAL99611.1|AF348415_1 cytosolic aldehyde dehydrogenase RF2D [... 114 2e-25
>gb|AAL99608.1|AF348412_1 cytosolic aldehyde dehydrogenase RF2C [Zea mays]
Length = 502
Score = 122 bits (306), Expect = 1e-27
Identities = 58/76 (76%), Positives = 65/76 (85%)
Frame = -2
Query: 405 ANNTRYGLAAGIVTKSLDTANTVSRSIRAGVVWINCYFAFGNDIPYGGYKMSGFGRDFGL 226
ANNTRYGLAAGIVTK++D ANTVSRSIRAG +WINCYFAF D P+GGYKMSGFG+D G+
Sbjct: 421 ANNTRYGLAAGIVTKNIDVANTVSRSIRAGAIWINCYFAFDPDAPFGGYKMSGFGKDMGM 480
Query: 225 EALHKYLPQLNPVVTP 178
+AL KYL Q VVTP
Sbjct: 481 DALDKYL-QTKTVVTP 495
>gb|AAL99609.1|AF348413_1 cytosolic aldehyde dehydrogenase RF2C [Zea mays]
Length = 503
Score = 122 bits (306), Expect = 1e-27
Identities = 58/76 (76%), Positives = 65/76 (85%)
Frame = -2
Query: 405 ANNTRYGLAAGIVTKSLDTANTVSRSIRAGVVWINCYFAFGNDIPYGGYKMSGFGRDFGL 226
ANNTRYGLAAGIVTK++D ANTVSRSIRAG +WINCYFAF D P+GGYKMSGFG+D G+
Sbjct: 422 ANNTRYGLAAGIVTKNIDVANTVSRSIRAGAIWINCYFAFDPDAPFGGYKMSGFGKDMGM 481
Query: 225 EALHKYLPQLNPVVTP 178
+AL KYL Q VVTP
Sbjct: 482 DALDKYL-QTKTVVTP 496
>dbj|BAA96794.1| cytosolic aldehyde dehydrogenase [Oryza sativa (japonica
cultivar-group)] gi|14164407|dbj|BAB55806.1| cytosolic
aldehyde dehydrogenase [Oryza sativa (japonica
cultivar-group)]
Length = 502
Score = 116 bits (291), Expect = 6e-26
Identities = 54/76 (71%), Positives = 63/76 (82%)
Frame = -2
Query: 405 ANNTRYGLAAGIVTKSLDTANTVSRSIRAGVVWINCYFAFGNDIPYGGYKMSGFGRDFGL 226
AN+TRYGLAAGIVTK++D ANTVSRSIRAG +WINCY F D+P+GGYKMSGFG+D G+
Sbjct: 421 ANSTRYGLAAGIVTKNIDVANTVSRSIRAGAIWINCYLGFDPDVPFGGYKMSGFGKDMGM 480
Query: 225 EALHKYLPQLNPVVTP 178
+AL KYL VVTP
Sbjct: 481 DALEKYL-HTKAVVTP 495
>gb|AAL99610.1|AF348414_1 cytosolic aldehyde dehydrogenase RF2D [Zea mays]
Length = 466
Score = 114 bits (286), Expect = 2e-25
Identities = 56/75 (74%), Positives = 62/75 (82%)
Frame = -2
Query: 405 ANNTRYGLAAGIVTKSLDTANTVSRSIRAGVVWINCYFAFGNDIPYGGYKMSGFGRDFGL 226
AN TRYGLAAGIVTKSLD AN VSRS+RAG VW+NCYFAF D P+GGYKMSGFGRD GL
Sbjct: 385 ANCTRYGLAAGIVTKSLDVANRVSRSVRAGTVWVNCYFAFDPDAPFGGYKMSGFGRDQGL 444
Query: 225 EALHKYLPQLNPVVT 181
A+ KYL Q+ V+T
Sbjct: 445 AAMDKYL-QVKSVIT 458
>gb|AAL99611.1|AF348415_1 cytosolic aldehyde dehydrogenase RF2D [Zea mays]
Length = 511
Score = 114 bits (286), Expect = 2e-25
Identities = 56/75 (74%), Positives = 62/75 (82%)
Frame = -2
Query: 405 ANNTRYGLAAGIVTKSLDTANTVSRSIRAGVVWINCYFAFGNDIPYGGYKMSGFGRDFGL 226
AN TRYGLAAGIVTKSLD AN VSRS+RAG VW+NCYFAF D P+GGYKMSGFGRD GL
Sbjct: 430 ANCTRYGLAAGIVTKSLDVANRVSRSVRAGTVWVNCYFAFDPDAPFGGYKMSGFGRDQGL 489
Query: 225 EALHKYLPQLNPVVT 181
A+ KYL Q+ V+T
Sbjct: 490 AAMDKYL-QVKSVIT 503
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 379,441,405
Number of Sequences: 1393205
Number of extensions: 8286568
Number of successful extensions: 22902
Number of sequences better than 10.0: 1000
Number of HSP's better than 10.0 without gapping: 22202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22761
length of database: 448,689,247
effective HSP length: 110
effective length of database: 295,436,697
effective search space used: 7090480728
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
