Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003940A_C01 KMC003940A_c01
(441 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_007339.1|ND2_11604 NADH dehydrogenase subunit 2 [Albinari... 34 0.47
gb|EAA15794.1| putative yir3 protein [Plasmodium yoelii yoelii] 31 4.0
gb|EAA16967.1| putative yir4 protein [Plasmodium yoelii yoelii] 30 6.8
gb|AAO53221.1| hypothetical protein [Dictyostelium discoideum] 30 8.8
ref|NP_770495.1| bll3855 [Bradyrhizobium japonicum] gi|27352116|... 30 8.8
>ref|NP_007339.1|ND2_11604 NADH dehydrogenase subunit 2 [Albinaria caerulea]
gi|1352544|sp|P48902|NU2M_ALBCO NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 2 gi|2147779|pir||S59153 NADH2
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 - land
snail mitochondrion gi|975679|emb|CAA58306.1| ND2
[Albinaria caerulea]
Length = 307
Score = 33.9 bits (76), Expect = 0.47
Identities = 18/58 (31%), Positives = 34/58 (58%)
Frame = -2
Query: 185 LLLFGV*ISINSTNWEKLWVIISIKVIWFL*PRRCLIL*LKILIGQFIYMVFLMSKVS 12
+++ G +S+ S+NW +W+ + I ++ F+ +L KI+ G+ I M FL+ VS
Sbjct: 11 MIILGPILSMTSSNWIIIWIGLEISLLGFV---SYYMLMKKIMSGEGIMMYFLIQSVS 65
>gb|EAA15794.1| putative yir3 protein [Plasmodium yoelii yoelii]
Length = 267
Score = 30.8 bits (68), Expect = 4.0
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 12/78 (15%)
Frame = +1
Query: 55 IKIFN*RIRQRRGYKNHITLIDI-----------MTHSFSQFVLLIEI*TPNKSNIRHID 201
+K +N +I GY+N+ LIDI M+ + F+LL +I T N D
Sbjct: 112 VKKYNEKIDGVSGYQNYKDLIDIKKNLMSIDIKAMSKFYDAFILLCDICTGVDENSSKCD 171
Query: 202 -NLPIVKSFYKYFYKYNE 252
NL K F K + + NE
Sbjct: 172 NNLEKAKKFAKKYDELNE 189
>gb|EAA16967.1| putative yir4 protein [Plasmodium yoelii yoelii]
Length = 282
Score = 30.0 bits (66), Expect = 6.8
Identities = 23/84 (27%), Positives = 42/84 (49%), Gaps = 12/84 (14%)
Frame = +1
Query: 64 FN*RIRQRRGYKNHITLIDI-----------MTHSFSQFVLLIEI*T-PNKSNIRHIDNL 207
+N +I++ GY+ + LIDI M+ + F+LL +I T N++N +NL
Sbjct: 116 YNQKIKEVTGYQTYNELIDIKEDLMSIDIKVMSRFYDAFILLCDICTGVNENNSNCDNNL 175
Query: 208 PIVKSFYKYFYKYNEI*LSPLQSP 279
+ F + + + NE + + SP
Sbjct: 176 GKAEEFVEKYDELNEDYYNGINSP 199
>gb|AAO53221.1| hypothetical protein [Dictyostelium discoideum]
Length = 1170
Score = 29.6 bits (65), Expect = 8.8
Identities = 12/26 (46%), Positives = 19/26 (72%)
Frame = +2
Query: 230 NISTNITRFDYHHFNLPTEKEDINRL 307
N + N+++F H+F LPTE ED+ +L
Sbjct: 397 NFTLNVSKF--HYFQLPTESEDVLKL 420
>ref|NP_770495.1| bll3855 [Bradyrhizobium japonicum] gi|27352116|dbj|BAC49120.1|
bll3855 [Bradyrhizobium japonicum USDA 110]
Length = 403
Score = 29.6 bits (65), Expect = 8.8
Identities = 13/47 (27%), Positives = 25/47 (52%)
Frame = -1
Query: 174 RSLNFN*QYKLGEAVGHNID*SDMVLVTTSLPYSLVEDFDWAVHIHG 34
R L N Y + + VG+ + S++ ++ ++P + DWA+ HG
Sbjct: 313 RLLTLNAAYAM-DTVGNKVAKSEIAMIKVAVPNMACQVIDWAIQAHG 358
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 363,894,099
Number of Sequences: 1393205
Number of extensions: 7336519
Number of successful extensions: 14524
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14520
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 6689237688
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
