Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003939A_C02 KMC003939A_c02
(704 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T12427 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ... 37 0.27
gb|AAG14022.1| NADH dehydrogenase [Picris pauciflora] 36 0.45
pir||T12444 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ... 36 0.45
pir||T12442 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ... 36 0.45
pir||T12445 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ... 35 0.77
>pir||T12427 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Vernonia
noveboracensis chloroplast (fragment)
gi|4007450|gb|AAC98102.1| NADH dehydrogenase [Vernonia
noveboracensis]
Length = 260
Score = 37.0 bits (84), Expect = 0.27
Identities = 20/50 (40%), Positives = 29/50 (58%)
Frame = +2
Query: 68 YSTKQYQ*DENIKHA*QPILSLPK*SHLLIFSIVNRSSTLSMIKGLILIL 217
+STK Y+ DEN+++ QP LS+P + I+S S + LILIL
Sbjct: 27 FSTKVYKIDENVRNIIQPFLSIPHFGNTKIYSYPYESDNTMLFPILILIL 76
>gb|AAG14022.1| NADH dehydrogenase [Picris pauciflora]
Length = 301
Score = 36.2 bits (82), Expect = 0.45
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +2
Query: 68 YSTKQYQ*DENIKHA*QPILSLPK*SHLLIFSIVNRSSTLSMIKGLILIL 217
+S K Y+ DEN+K+ QP+LS+P S+ +S S + L+LIL
Sbjct: 81 FSNKVYKIDENVKNMIQPLLSIPHFSNTKTYSYPYESDNTMLFPILVLIL 130
>pir||T12444 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Vernonia
fastigiata chloroplast (fragment)
gi|4007468|gb|AAC98111.1| NADH dehydrogenase [Vernonia
fastigiata]
Length = 260
Score = 36.2 bits (82), Expect = 0.45
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +2
Query: 68 YSTKQYQ*DENIKHA*QPILSLPK*SHLLIFSIVNRSSTLSMIKGLILIL 217
+S K Y+ DEN+++ QP+LS+P + I+S S + LILIL
Sbjct: 27 FSNKVYKMDENVRNTVQPLLSIPHFGNTKIYSYPYESDNTMLFPILILIL 76
>pir||T12442 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Vernonia
galamensis chloroplast (fragment)
gi|4007464|gb|AAC98109.1| NADH dehydrogenase [Vernonia
galamensis]
Length = 260
Score = 36.2 bits (82), Expect = 0.45
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +2
Query: 68 YSTKQYQ*DENIKHA*QPILSLPK*SHLLIFSIVNRSSTLSMIKGLILIL 217
+S K Y+ DEN+++ QP+LS+P + I+S S + LILIL
Sbjct: 27 FSNKVYKMDENVRNTVQPLLSIPHFGNTKIYSYPYESDNTMLFPILILIL 76
>pir||T12445 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Vernonia
poskeana chloroplast (fragment)
gi|4007470|gb|AAC98112.1| NADH dehydrogenase [Vernonia
poskeana]
Length = 262
Score = 35.4 bits (80), Expect = 0.77
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +2
Query: 68 YSTKQYQ*DENIKHA*QPILSLPK*SHLLIFSIVNRSSTLSMIKGLILIL 217
+S K Y+ DEN+++ QP LS+P + I+S S + LILIL
Sbjct: 32 FSNKVYKIDENVRNTIQPFLSIPHFGNTKIYSYPYESDNTMLFPILILIL 81
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 546,934,979
Number of Sequences: 1393205
Number of extensions: 11144703
Number of successful extensions: 23023
Number of sequences better than 10.0: 97
Number of HSP's better than 10.0 without gapping: 22505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23016
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32091529758
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
