Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003937A_C01 KMC003937A_c01
(550 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF91178.1|AF203700_1 ClpB [Phaseolus lunatus] 62 7e-15
ref|NP_565586.1| HSP100/ClpB, putative; protein id: At2g25140.1,... 54 3e-13
pir||G84644 probable ATP-dependent CLPB protein [imported] - Ara... 54 3e-13
ref|NP_568314.1| HSP100/ClpB, putative; protein id: At5g15450.1 ... 50 2e-08
ref|ZP_00072399.1| hypothetical protein [Trichodesmium erythraeu... 37 1e-06
>gb|AAF91178.1|AF203700_1 ClpB [Phaseolus lunatus]
Length = 977
Score = 62.0 bits (149), Expect(2) = 7e-15
Identities = 30/41 (73%), Positives = 34/41 (82%)
Frame = -1
Query: 550 ERLSKLENDLSLLKQKPKELTDLWDHEKALMTRISSLKAKI 428
ERLSKLENDLSLLKQK KEL + WD+EK MTRI S+K +I
Sbjct: 527 ERLSKLENDLSLLKQKQKELAEQWDNEKVFMTRIRSIKEEI 567
Score = 39.7 bits (91), Expect(2) = 7e-15
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = -2
Query: 357 ISPERQLEEAEKNLADLQKPRQSLLRKEVTDVDITNL 247
+S +RQLEEAEKNL D +K +SLLR+ +DIT +
Sbjct: 595 MSLQRQLEEAEKNLTDFRKSGKSLLRRRGHYLDITEI 631
>ref|NP_565586.1| HSP100/ClpB, putative; protein id: At2g25140.1, supported by cDNA:
gi_17979453 [Arabidopsis thaliana]
gi|17979454|gb|AAL50064.1| At2g25140/F13D4.100
[Arabidopsis thaliana] gi|25090122|gb|AAN72234.1|
At2g25140/F13D4.100 [Arabidopsis thaliana]
Length = 964
Score = 53.5 bits (127), Expect(2) = 3e-13
Identities = 26/41 (63%), Positives = 31/41 (75%)
Frame = -1
Query: 550 ERLSKLENDLSLLKQKPKELTDLWDHEKALMTRISSLKAKI 428
ERL K+ENDLS LKQK KEL W+ EK+LMT+I S K +I
Sbjct: 520 ERLQKIENDLSTLKQKQKELNVQWEKEKSLMTKIRSFKEEI 560
Score = 42.7 bits (99), Expect(2) = 3e-13
Identities = 21/37 (56%), Positives = 29/37 (77%)
Frame = -2
Query: 357 ISPERQLEEAEKNLADLQKPRQSLLRKEVTDVDITNL 247
+S +RQLEEAEKNL + ++ QSLLR+ VTD+DI +
Sbjct: 588 LSLQRQLEEAEKNLTNFRQFGQSLLREVVTDLDIAEI 624
>pir||G84644 probable ATP-dependent CLPB protein [imported] - Arabidopsis
thaliana
Length = 874
Score = 53.5 bits (127), Expect(2) = 3e-13
Identities = 26/41 (63%), Positives = 31/41 (75%)
Frame = -1
Query: 550 ERLSKLENDLSLLKQKPKELTDLWDHEKALMTRISSLKAKI 428
ERL K+ENDLS LKQK KEL W+ EK+LMT+I S K +I
Sbjct: 430 ERLQKIENDLSTLKQKQKELNVQWEKEKSLMTKIRSFKEEI 470
Score = 42.7 bits (99), Expect(2) = 3e-13
Identities = 21/37 (56%), Positives = 29/37 (77%)
Frame = -2
Query: 357 ISPERQLEEAEKNLADLQKPRQSLLRKEVTDVDITNL 247
+S +RQLEEAEKNL + ++ QSLLR+ VTD+DI +
Sbjct: 498 LSLQRQLEEAEKNLTNFRQFGQSLLREVVTDLDIAEI 534
>ref|NP_568314.1| HSP100/ClpB, putative; protein id: At5g15450.1 [Arabidopsis
thaliana] gi|11265210|pir||T51523 clpB heat shock
protein-like - Arabidopsis thaliana
gi|9755800|emb|CAC01744.1| clpB heat shock protein-like
[Arabidopsis thaliana]
Length = 968
Score = 50.1 bits (118), Expect(2) = 2e-08
Identities = 20/41 (48%), Positives = 34/41 (82%)
Frame = -1
Query: 550 ERLSKLENDLSLLKQKPKELTDLWDHEKALMTRISSLKAKI 428
ERL+++E +L LLK+K ELT+ W+HE+++M+R+ S+K +I
Sbjct: 515 ERLNRIETELVLLKEKQAELTEQWEHERSVMSRLQSIKEEI 555
Score = 29.3 bits (64), Expect(2) = 2e-08
Identities = 15/36 (41%), Positives = 21/36 (57%)
Frame = -2
Query: 354 SPERQLEEAEKNLADLQKPRQSLLRKEVTDVDITNL 247
S +RQL EAEK L + +S+ R+EV DI +
Sbjct: 584 SLQRQLNEAEKELNEYLSSGKSMFREEVLGSDIAEI 619
>ref|ZP_00072399.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 870
Score = 37.4 bits (85), Expect(2) = 1e-06
Identities = 18/37 (48%), Positives = 26/37 (69%)
Frame = -2
Query: 357 ISPERQLEEAEKNLADLQKPRQSLLRKEVTDVDITNL 247
I+ ++Q+EEAE LA Q Q+LLR+EVT+ DI +
Sbjct: 509 INLQKQVEEAEAKLATTQTSGQTLLREEVTEADIAEI 545
Score = 36.2 bits (82), Expect(2) = 1e-06
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = -1
Query: 550 ERLSKLENDLSLLKQKPKELTDLWDHEKALMTRISSLKAKI 428
ERL +LE DL+ LK+ + L W+ EK +++ I ++K +I
Sbjct: 441 ERLGRLEKDLANLKEGQRALNAQWESEKGIISTIQTVKEEI 481
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 406,932,400
Number of Sequences: 1393205
Number of extensions: 7493560
Number of successful extensions: 22947
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 22525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22941
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
