Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003935A_C01 KMC003935A_c01
(444 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567431.1| bHLH protein; protein id: At4g14410.1, supporte... 50 5e-06
pir||B71406 hypothetical protein - Arabidopsis thaliana gi|22447... 50 5e-06
ref|NP_175518.1| bHLH protein; protein id: At1g51070.1, supporte... 39 0.019
ref|NP_200279.1| bHLH protein; protein id: At5g54680.1, supporte... 38 0.025
gb|AAM64276.1| bHLH transcription factor, putative [Arabidopsis ... 38 0.025
>ref|NP_567431.1| bHLH protein; protein id: At4g14410.1, supported by cDNA: 40736.,
supported by cDNA: gi_20856628 [Arabidopsis thaliana]
gi|20856629|gb|AAM26676.1| AT4g14410/dl3245w
[Arabidopsis thaliana] gi|21593632|gb|AAM65599.1|
unknown [Arabidopsis thaliana]
gi|22137100|gb|AAM91395.1| At4g14410/dl3245w
[Arabidopsis thaliana]
Length = 283
Score = 50.4 bits (119), Expect = 5e-06
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = -2
Query: 443 GYIPMWQYLPSSARDTSHDHELRPPAA 363
GY+PMW Y+P S RDTS D ELRPPAA
Sbjct: 257 GYMPMWHYMPQSVRDTSRDQELRPPAA 283
>pir||B71406 hypothetical protein - Arabidopsis thaliana
gi|2244797|emb|CAB10220.1| hypothetical protein
[Arabidopsis thaliana] gi|7268146|emb|CAB78483.1|
hypothetical protein [Arabidopsis thaliana]
gi|20127109|gb|AAM10963.1|AF488628_1 putative bHLH
transcription factor [Arabidopsis thaliana]
Length = 277
Score = 50.4 bits (119), Expect = 5e-06
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = -2
Query: 443 GYIPMWQYLPSSARDTSHDHELRPPAA 363
GY+PMW Y+P S RDTS D ELRPPAA
Sbjct: 251 GYMPMWHYMPQSVRDTSRDQELRPPAA 277
>ref|NP_175518.1| bHLH protein; protein id: At1g51070.1, supported by cDNA: 16284.,
supported by cDNA: gi_20127114 [Arabidopsis thaliana]
gi|25405430|pir||H96547 probable bHLH transcription
factor [imported] - Arabidopsis thaliana
gi|12320783|gb|AAG50538.1|AC079828_9 bHLH transcription
factor, putative [Arabidopsis thaliana]
gi|20127115|gb|AAM10965.1|AF488632_1 putative bHLH
transcription factor [Arabidopsis thaliana]
gi|21553747|gb|AAM62840.1| bHLH transcription factor,
putative [Arabidopsis thaliana]
gi|27311655|gb|AAO00793.1| bHLH transcription factor,
putative [Arabidopsis thaliana]
Length = 226
Score = 38.5 bits (88), Expect = 0.019
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = -2
Query: 431 MWQYLPSSARDTSHDHELRPPAA 363
MWQ++P +A DTS DH LRPP A
Sbjct: 204 MWQFMPPAAVDTSQDHVLRPPVA 226
>ref|NP_200279.1| bHLH protein; protein id: At5g54680.1, supported by cDNA: 22343.,
supported by cDNA: gi_15451009, supported by cDNA:
gi_20127110 [Arabidopsis thaliana]
gi|10176795|dbj|BAB09934.1|
gene_id:K5F14.2~pir||B71406~similar to unknown protein
[Arabidopsis thaliana] gi|15451010|gb|AAK96776.1|
Unknown protein [Arabidopsis thaliana]
gi|20127111|gb|AAM10964.1|AF488629_1 putative bHLH
transcription factor [Arabidopsis thaliana]
gi|25084222|gb|AAN72200.1| Unknown protein [Arabidopsis
thaliana]
Length = 234
Score = 38.1 bits (87), Expect = 0.025
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = -2
Query: 437 IPMWQYLPSSARDTSHDHELRPPAA 363
+ MWQ++P ++ DTS DH LRPP A
Sbjct: 210 VAMWQFMPPASVDTSQDHVLRPPVA 234
>gb|AAM64276.1| bHLH transcription factor, putative [Arabidopsis thaliana]
Length = 234
Score = 38.1 bits (87), Expect = 0.025
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = -2
Query: 437 IPMWQYLPSSARDTSHDHELRPPAA 363
+ MWQ++P ++ DTS DH LRPP A
Sbjct: 210 VAMWQFMPPASVDTSQDHVLRPPVA 234
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 365,959,939
Number of Sequences: 1393205
Number of extensions: 7185012
Number of successful extensions: 14429
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 14149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14425
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 6655800768
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
