Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003931A_C01 KMC003931A_c01
(498 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564944.1| bHLH protein; protein id: At1g68810.1, supporte... 49 2e-05
dbj|BAB16490.1| P0665D10.15 [Oryza sativa (japonica cultivar-gro... 48 7e-05
ref|NP_181646.1| bHLH protein; protein id: At2g41130.1 [Arabidop... 40 0.011
gb|AAL69455.1| At2g41130/T3K9.10 [Arabidopsis thaliana] 40 0.011
dbj|BAA96767.1| unnamed protein product [Oryza sativa (japonica ... 40 0.019
>ref|NP_564944.1| bHLH protein; protein id: At1g68810.1, supported by cDNA:
gi_18176097 [Arabidopsis thaliana]
gi|25404781|pir||H96712 probable DNA-binding protein
T6L1.1 [imported] - Arabidopsis thaliana
gi|12323209|gb|AAG51581.1|AC011665_2 putative
DNA-binding protein [Arabidopsis thaliana]
gi|12324140|gb|AAG52041.1|AC011914_11 putative
DNA-binding protein; 36199-34606 [Arabidopsis thaliana]
gi|18176098|gb|AAL59983.1| putative DNA-binding protein
[Arabidopsis thaliana] gi|21689745|gb|AAM67516.1|
putative DNA-binding protein [Arabidopsis thaliana]
Length = 368
Score = 49.3 bits (116), Expect = 2e-05
Identities = 27/89 (30%), Positives = 59/89 (65%), Gaps = 1/89 (1%)
Frame = -2
Query: 497 LSDIRQALDALHLMIMRAEIATLGGRMKNVFVIISCKEQNFEDAEYRQFLAGSVHQALRS 318
L D+ + L A+ L ++AEI T+GGR+KNV + ++ +E + E+ E ++ G++ +AL++
Sbjct: 272 LPDMIKTLKAMRLKTLKAEITTVGGRVKNV-LFVTGEESSGEEVE-EEYCIGTIEEALKA 329
Query: 317 VLDRFSVSQDILE-SRKRRRISIFSSTSL 234
V+++ +V + + KR+R+S ++ ++
Sbjct: 330 VMEKSNVEESSSSGNAKRQRMSSHNTITI 358
>dbj|BAB16490.1| P0665D10.15 [Oryza sativa (japonica cultivar-group)]
gi|21327944|dbj|BAC00537.1| P0489G09.4 [Oryza sativa
(japonica cultivar-group)]
Length = 267
Score = 47.8 bits (112), Expect = 7e-05
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
Frame = -2
Query: 491 DIRQALDALHLMIMRAEIATLGGRMKNVFVIISCKEQNFEDAEYRQFLAGSVHQALRSVL 312
D+++AL L L ++ +E+ TLGGR++ F ++SC + A SV AL+SVL
Sbjct: 179 DVKRALQPLGLEVVGSEVTTLGGRVRLAF-LVSCGSRGGAAAA----AMASVRHALQSVL 233
Query: 311 DRFSVSQDI------LESRKRRRISIFSSTS 237
D+ S D L KRR++S F S+S
Sbjct: 234 DKASSGFDFAPRAASLLGSKRRKVSTFESSS 264
>ref|NP_181646.1| bHLH protein; protein id: At2g41130.1 [Arabidopsis thaliana]
gi|7487617|pir||T02106 hypothetical protein At2g41130
[imported] - Arabidopsis thaliana
gi|3402704|gb|AAD11998.1| unknown protein [Arabidopsis
thaliana] gi|26453118|dbj|BAC43635.1| putative bHLH
transcription factor bHLH106 [Arabidopsis thaliana]
Length = 253
Score = 40.4 bits (93), Expect = 0.011
Identities = 25/68 (36%), Positives = 41/68 (59%)
Frame = -2
Query: 497 LSDIRQALDALHLMIMRAEIATLGGRMKNVFVIISCKEQNFEDAEYRQFLAGSVHQALRS 318
L D+ + L +L++ +RAE+ T+GGR ++V V+ + KE + E FL AL+S
Sbjct: 166 LPDLMEILKSLNMKTLRAEMVTIGGRTRSVLVVAADKEMH--GVESVHFL----QNALKS 219
Query: 317 VLDRFSVS 294
+L+R S S
Sbjct: 220 LLERSSKS 227
>gb|AAL69455.1| At2g41130/T3K9.10 [Arabidopsis thaliana]
Length = 245
Score = 40.4 bits (93), Expect = 0.011
Identities = 25/68 (36%), Positives = 41/68 (59%)
Frame = -2
Query: 497 LSDIRQALDALHLMIMRAEIATLGGRMKNVFVIISCKEQNFEDAEYRQFLAGSVHQALRS 318
L D+ + L +L++ +RAE+ T+GGR ++V V+ + KE + E FL AL+S
Sbjct: 158 LPDLMEILKSLNMKTLRAEMVTIGGRTRSVLVVAADKEMH--GVESVHFL----QNALKS 211
Query: 317 VLDRFSVS 294
+L+R S S
Sbjct: 212 LLERSSKS 219
>dbj|BAA96767.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|9757687|dbj|BAB08206.1| ESTs
C26093(C11622),AU090634(C12429) correspond to a region
of the predicted gene.~Similar to Arabidopsis thaliana
chromosome II BAC T3K9; hypothetical protein (AC004261)
[Oryza sativa (japonica cultivar-group)]
Length = 258
Score = 39.7 bits (91), Expect = 0.019
Identities = 26/80 (32%), Positives = 41/80 (50%)
Frame = -2
Query: 497 LSDIRQALDALHLMIMRAEIATLGGRMKNVFVIISCKEQNFEDAEYRQFLAGSVHQALRS 318
++ I A L L +RAE+ +LGGR+++VF++ C+E+ + L +V QAL
Sbjct: 171 IAGITHAFHGLRLRTVRAEMTSLGGRVQHVFIL--CREEGIAGGVSLKSLKEAVRQALAK 228
Query: 317 VLDRFSVSQDILESRKRRRI 258
V V KR+RI
Sbjct: 229 VASPELVYGSSHFQSKRQRI 248
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 395,928,516
Number of Sequences: 1393205
Number of extensions: 7669664
Number of successful extensions: 16131
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 15847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16128
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
