Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003928A_C01 KMC003928A_c01
(479 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191175.1| putative protein; protein id: At3g56160.1 [Arab... 98 5e-20
ref|XP_139487.1| hypothetical protein XP_139487 [Mus musculus] 33 2.1
dbj|BAC21323.1| putative exportin, tRNA (nuclear export receptor... 31 6.1
dbj|BAC16491.1| contains ESTs AU161005(C53159),C27824(C53159)~ex... 31 6.1
ref|NP_498868.1| Heat shock 105kD (86.9 kD) [Caenorhabditis eleg... 31 6.1
>ref|NP_191175.1| putative protein; protein id: At3g56160.1 [Arabidopsis thaliana]
gi|11290102|pir||T47733 hypothetical protein F18O21.120
- Arabidopsis thaliana gi|7572914|emb|CAB87415.1|
putative protein [Arabidopsis thaliana]
Length = 341
Score = 97.8 bits (242), Expect = 5e-20
Identities = 52/87 (59%), Positives = 66/87 (75%), Gaps = 2/87 (2%)
Frame = -2
Query: 475 SLSIISGGRNSVFSRRENANALILVASQKTLPVMVAVIETLHGAFGESGLLVLPCIAAHL 296
S+ I+SG S +EN+ A++LV+SQKTLPVMVAV+E L GAFGE+GLLVLPC+AAHL
Sbjct: 255 SIRILSGLTGGSKSSKENSTAVLLVSSQKTLPVMVAVVEQLGGAFGETGLLVLPCVAAHL 314
Query: 295 NQVIVDSFLVN--FLRPRVDSNKVKVA 221
NQ+++DS LVN R + S KVK A
Sbjct: 315 NQIMIDSVLVNLWLRRGKDTSTKVKTA 341
>ref|XP_139487.1| hypothetical protein XP_139487 [Mus musculus]
Length = 200
Score = 32.7 bits (73), Expect = 2.1
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -1
Query: 434 PSRKCQCSHTCCK-PENITSNGSSDRDPSWCIW 339
PS + C H C K P + + GSS+ SWC++
Sbjct: 134 PSARGDCCHACTKTPGGLQTVGSSEEQTSWCVF 166
>dbj|BAC21323.1| putative exportin, tRNA (nuclear export receptor for tRNAs) [Oryza
sativa (japonica cultivar-group)]
Length = 982
Score = 31.2 bits (69), Expect = 6.1
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2
Query: 409 ILVASQKTLPVMVAVIETLHGAFGESGLLVLPCIAAHLNQVIVDS 275
+L++ P+ +I LH G+ VLPCI L Q++VD+
Sbjct: 690 VLISFPNVKPLRSKIISFLHRMVEILGISVLPCIPIALRQLLVDN 734
>dbj|BAC16491.1| contains ESTs AU161005(C53159),C27824(C53159)~exportin,
tRNA-like~nuclear export receptor for tRNAs-like [Oryza
sativa (japonica cultivar-group)]
Length = 980
Score = 31.2 bits (69), Expect = 6.1
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2
Query: 409 ILVASQKTLPVMVAVIETLHGAFGESGLLVLPCIAAHLNQVIVDS 275
+L++ P+ +I LH G+ VLPCI L Q++VD+
Sbjct: 690 VLISFPNVKPLRSKIISFLHRMVEILGISVLPCIPIALRQLLVDN 734
>ref|NP_498868.1| Heat shock 105kD (86.9 kD) [Caenorhabditis elegans]
gi|465809|sp|Q05036|YLA4_CAEEL Hypothetical 86.9 kDa
protein C30C11.4 in chromosome III gi|630569|pir||S44784
C30C11.4 protein - Caenorhabditis elegans
gi|156223|gb|AAA27967.1| Hypothetical protein C30C11.4
[Caenorhabditis elegans]
Length = 776
Score = 31.2 bits (69), Expect = 6.1
Identities = 25/85 (29%), Positives = 35/85 (40%)
Frame = -2
Query: 478 WSLSIISGGRNSVFSRRENANALILVASQKTLPVMVAVIETLHGAFGESGLLVLPCIAAH 299
W+ + +GG N VFS R+ LV+ ++ G F P + H
Sbjct: 409 WNSTGENGGENDVFSPRDEVPFSKLVSLLRS------------GPFNVEAHYAQPNVVPH 456
Query: 298 LNQVIVDSFLVNFLRPRVDSNKVKV 224
NQV + S+ VN RP D KV
Sbjct: 457 -NQVHIGSWKVNGARPGADGGNQKV 480
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 405,591,221
Number of Sequences: 1393205
Number of extensions: 8248694
Number of successful extensions: 19483
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 19053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19482
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
