Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003921A_C02 KMC003921A_c02
(710 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_347963.1| Spore coat protein F (COTF) related protein [Cl... 33 3.9
ref|NP_347526.1| Uncharacterized conserved membrane protein [Clo... 32 6.7
ref|XP_287857.1| hypothetical protein XP_287857 [Mus musculus] 32 8.7
>ref|NP_347963.1| Spore coat protein F (COTF) related protein [Clostridium
acetobutylicum] gi|25498193|pir||D97064 spore coat
protein F (COTF) related protein [imported] -
Clostridium acetobutylicum
gi|15024267|gb|AAK79303.1|AE007645_2 Spore coat protein
F (COTF) related protein [Clostridium acetobutylicum]
Length = 189
Score = 33.1 bits (74), Expect = 3.9
Identities = 27/85 (31%), Positives = 39/85 (45%)
Frame = +3
Query: 24 HNLGHLKVPSRNSNLDMHSNKNMFGFQLLANALPSHFIMEKHSKNISIYINKILRTTPFK 203
H+L L V NS +M +NM Q L N L SHF N+ + K + + K
Sbjct: 9 HDLHELIVSCVNSITNMAMFRNMVQDQDLKNILNSHFPAHIQDYNMKVEFVKKAQGSNQK 68
Query: 204 DDELSLPVYGINNRTNPETSLPPIS 278
+ +L V N ++P S PPI+
Sbjct: 69 LNVPNLNVMLQNFTSSPANSFPPIA 93
>ref|NP_347526.1| Uncharacterized conserved membrane protein [Clostridium
acetobutylicum] gi|25500529|pir||G97009 uncharacterized
conserved membrane protein CAC0890 [imported] -
Clostridium acetobutylicum
gi|15023787|gb|AAK78866.1|AE007604_5 Uncharacterized
conserved membrane protein [Clostridium acetobutylicum]
Length = 381
Score = 32.3 bits (72), Expect = 6.7
Identities = 19/40 (47%), Positives = 26/40 (64%), Gaps = 2/40 (5%)
Frame = -2
Query: 250 FVLLLMPYTGKLNSSSLKGVVLNILF--I*IEIFLECFSI 137
F+LL++ +GK SL VV+NI+ I IE+FL FSI
Sbjct: 143 FILLIIAISGKTGLRSLVSVVINIVIFSIVIELFLNNFSI 182
>ref|XP_287857.1| hypothetical protein XP_287857 [Mus musculus]
Length = 98
Score = 32.0 bits (71), Expect = 8.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 518 LLTTPTNGSEGTK*I*ALISLQHPCWRTSPCLSDI 622
+L TP + S+G K + L +PCW +PCLS +
Sbjct: 63 VLPTPPS-SQGNKHFNGTMGLHYPCWGATPCLSSL 96
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 587,293,721
Number of Sequences: 1393205
Number of extensions: 12055291
Number of successful extensions: 27449
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27430
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32654539052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
