Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003915A_C01 KMC003915A_c01
(497 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAH06040.1| Unknown (protein for MGC:7642) [Mus musculus] 66 2e-10
emb|CAA71172.1| hypothetical protein [Arabidopsis thaliana] 65 4e-10
pir||F86145 F22L4.5 protein - Arabidopsis thaliana gi|8920587|gb... 65 4e-10
ref|NP_171656.1| expressed protein; protein id: At1g01490.1, sup... 65 4e-10
gb|AAO63778.1| unknown [Populus tremuloides] 58 5e-08
>gb|AAH06040.1| Unknown (protein for MGC:7642) [Mus musculus]
Length = 167
Score = 65.9 bits (159), Expect = 2e-10
Identities = 28/35 (80%), Positives = 32/35 (91%)
Frame = -2
Query: 496 PVLELVKAYRAYNPYMTTHYHVQSMEENPNACVIC 392
PVLELVKAY+ YNP MTT+Y+VQS+EENPNAC IC
Sbjct: 133 PVLELVKAYKQYNPQMTTYYYVQSIEENPNACAIC 167
>emb|CAA71172.1| hypothetical protein [Arabidopsis thaliana]
Length = 101
Score = 65.1 bits (157), Expect = 4e-10
Identities = 27/34 (79%), Positives = 33/34 (96%)
Frame = -2
Query: 493 VLELVKAYRAYNPYMTTHYHVQSMEENPNACVIC 392
VLELVKAY+AYNP++TT+Y+ QS+EENPNACVIC
Sbjct: 68 VLELVKAYKAYNPHLTTYYYAQSIEENPNACVIC 101
>pir||F86145 F22L4.5 protein - Arabidopsis thaliana
gi|8920587|gb|AAF81309.1|AC061957_5 Contains a weak
similarity to a farnesylated protein GMFP5 mRNA from
Glycine max gb|U64916. ESTs gb|AI993148, gb|T44360 come
from this gene. [Arabidopsis thaliana]
Length = 203
Score = 65.1 bits (157), Expect = 4e-10
Identities = 27/34 (79%), Positives = 33/34 (96%)
Frame = -2
Query: 493 VLELVKAYRAYNPYMTTHYHVQSMEENPNACVIC 392
VLELVKAY+AYNP++TT+Y+ QS+EENPNACVIC
Sbjct: 170 VLELVKAYKAYNPHLTTYYYAQSIEENPNACVIC 203
>ref|NP_171656.1| expressed protein; protein id: At1g01490.1, supported by cDNA:
gi_17380661 [Arabidopsis thaliana]
gi|1922242|emb|CAA71173.1| hypothetical protein
[Arabidopsis thaliana] gi|17380662|gb|AAL36161.1|
unknown protein [Arabidopsis thaliana]
gi|20258999|gb|AAM14215.1| unknown protein [Arabidopsis
thaliana]
Length = 177
Score = 65.1 bits (157), Expect = 4e-10
Identities = 27/34 (79%), Positives = 33/34 (96%)
Frame = -2
Query: 493 VLELVKAYRAYNPYMTTHYHVQSMEENPNACVIC 392
VLELVKAY+AYNP++TT+Y+ QS+EENPNACVIC
Sbjct: 144 VLELVKAYKAYNPHLTTYYYAQSIEENPNACVIC 177
>gb|AAO63778.1| unknown [Populus tremuloides]
Length = 132
Score = 58.2 bits (139), Expect = 5e-08
Identities = 25/33 (75%), Positives = 31/33 (93%)
Frame = -2
Query: 493 VLELVKAYRAYNPYMTTHYHVQSMEENPNACVI 395
V ELVKAY+AYNP MTT+YHV+S+E++PNACVI
Sbjct: 99 VAELVKAYKAYNPPMTTYYHVRSVEDDPNACVI 131
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 424,816,201
Number of Sequences: 1393205
Number of extensions: 8523992
Number of successful extensions: 21408
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 20695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21403
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
