Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003914A_C01 KMC003914A_c01
(457 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_704193.1| ubiquitin carboxyl-terminal hydrolase, putative... 34 0.80
gb|EAA06544.1| agCP13320 [Anopheles gambiae str. PEST] 31 5.2
ref|NP_701279.1| hypothetical protein [Plasmodium falciparum 3D7... 31 5.2
ref|NP_504412.1| Putative nuclear protein, with a coiled coil-4 ... 31 6.8
gb|AAB65988.2| Hypothetical protein B0238.9 [Caenorhabditis eleg... 31 6.8
>ref|NP_704193.1| ubiquitin carboxyl-terminal hydrolase, putative [Plasmodium
falciparum 3D7] gi|23498931|emb|CAD51009.1| ubiquitin
carboxyl-terminal hydrolase, putative [Plasmodium
falciparum 3D7]
Length = 3183
Score = 33.9 bits (76), Expect = 0.80
Identities = 17/63 (26%), Positives = 35/63 (54%), Gaps = 1/63 (1%)
Frame = +3
Query: 39 TSPENNGDQNQKQSNL*SSLGIMNSTSSLISICREEEKKKVTSLEQPESII-GKSSRQMR 215
T +NN + N +N ++ +S+ S + R++++KK T+L+ P I K ++Q+
Sbjct: 2230 TDEDNNNNNNNNNNNNNNNDNTCSSSCSNVHFRRKQKRKKQTNLDNPNEIYNNKDNKQIN 2289
Query: 216 LHQ 224
H+
Sbjct: 2290 QHR 2292
>gb|EAA06544.1| agCP13320 [Anopheles gambiae str. PEST]
Length = 480
Score = 31.2 bits (69), Expect = 5.2
Identities = 14/21 (66%), Positives = 15/21 (70%)
Frame = -1
Query: 199 LFPIIDSGCSKLVTFFFSSSL 137
L P+IDSGCSK F F SSL
Sbjct: 4 LRPVIDSGCSKQALFLFCSSL 24
>ref|NP_701279.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496346|gb|AAN36003.1|AE014842_25 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1794
Score = 31.2 bits (69), Expect = 5.2
Identities = 33/118 (27%), Positives = 45/118 (37%), Gaps = 7/118 (5%)
Frame = +2
Query: 65 KPEAIKFVVITWNNELYILSYLYLQGRGEKKSY----KFGTARVNYRKKLATNATASTLI 232
K E IK V+ +N E I+S L + K K VN + L N TL
Sbjct: 524 KNEDIKKVIECYNTEQIIISLLRIMNEFLLKDILLQKKTNDVIVNKKNMLELNEEYGTLY 583
Query: 233 AVAMLIWGLQ---TQLLCDCNCRCGRQSKTRNKLIQTY*KQNRLQKEKKYKKDHTDYN 397
L +LLC C+ + RN LI TY ++K Y + DY+
Sbjct: 584 NKKDYYMDLNKIIVELLCICSHYKDLRGFLRNNLISTYFIHILTNEDKLYNELKMDYD 641
>ref|NP_504412.1| Putative nuclear protein, with a coiled coil-4 domain, of
bilaterial origin [Caenorhabditis elegans]
gi|25396420|pir||E89044 protein B0238.9 [imported] -
Caenorhabditis elegans
Length = 530
Score = 30.8 bits (68), Expect = 6.8
Identities = 15/32 (46%), Positives = 19/32 (58%)
Frame = +2
Query: 281 CNCRCGRQSKTRNKLIQTY*KQNRLQKEKKYK 376
C CRC R TR+K Y K+ ++KEKK K
Sbjct: 174 CRCRCDRGQMTRDKQ-ALYEKEKAVEKEKKKK 204
>gb|AAB65988.2| Hypothetical protein B0238.9 [Caenorhabditis elegans]
Length = 472
Score = 30.8 bits (68), Expect = 6.8
Identities = 15/32 (46%), Positives = 19/32 (58%)
Frame = +2
Query: 281 CNCRCGRQSKTRNKLIQTY*KQNRLQKEKKYK 376
C CRC R TR+K Y K+ ++KEKK K
Sbjct: 116 CRCRCDRGQMTRDKQ-ALYEKEKAVEKEKKKK 146
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 381,120,005
Number of Sequences: 1393205
Number of extensions: 7602410
Number of successful extensions: 25110
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 23894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25067
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11413361193
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
